View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1792_low_4 (Length: 214)
Name: NF1792_low_4
Description: NF1792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1792_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 40552724 - 40552907
Alignment:
| Q |
15 |
aggggacaatgaggccacacaacatgctgctatgctcataaatgaagcttgtttgaaccatggttttttccaagtaattaatcatggtgttgacccacat |
114 |
Q |
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| T |
40552724 |
aggggacaatgaggccacacaacatgctgctatgctcataaatgaagcttgtttgaaccatggttttttccaagtcattaatcatggtgttgatctacat |
40552823 |
T |
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| Q |
115 |
ctcattactcaagcttatgttcaaatggacactatttttaaactctcacttcataggaaagagagtgtttataaggcacctggt |
198 |
Q |
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| T |
40552824 |
ctcattactcaagcttatgttcaaatggacactatttttaaactcccacttcataggaaagagagtgtttataaggcacctggt |
40552907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 40581721 - 40581803
Alignment:
| Q |
36 |
acatgctgctatgctcataaatgaagcttgtttgaaccatggttttttccaagtaattaatcatggtgttgacccacatctca |
118 |
Q |
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| T |
40581721 |
acatgctgctacggtcataaatgagtcttgtttgaaccatggttttttccaagtcattaatcatggtgttgatccacatctca |
40581803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 44114837 - 44114787
Alignment:
| Q |
59 |
aagcttgtttgaaccatggttttttccaagtaattaatcatggtgttgacc |
109 |
Q |
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| T |
44114837 |
aagcatgtttgaaacatggtttcttccaagtgattaatcatggtgtggacc |
44114787 |
T |
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