View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17930_high_1 (Length: 533)

Name: NF17930_high_1
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17930_high_1
NF17930_high_1
[»] chr6 (10 HSPs)
chr6 (208-533)||(30845155-30845480)
chr6 (15-108)||(30845580-30845673)
chr6 (358-525)||(24350393-24350570)
chr6 (437-525)||(10670293-10670381)
chr6 (405-524)||(10772636-10772754)
chr6 (394-533)||(24842920-24843058)
chr6 (372-444)||(32747853-32747925)
chr6 (437-499)||(9566641-9566703)
chr6 (434-499)||(11366564-11366628)
chr6 (325-356)||(32747828-32747859)
[»] chr2 (13 HSPs)
chr2 (394-533)||(14951089-14951228)
chr2 (358-533)||(6186478-6186662)
chr2 (394-520)||(38531611-38531736)
chr2 (405-524)||(9910358-9910477)
chr2 (438-525)||(27888556-27888643)
chr2 (437-525)||(1533082-1533170)
chr2 (440-516)||(40900017-40900093)
chr2 (46-104)||(38531228-38531286)
chr2 (51-104)||(14950300-14950353)
chr2 (386-483)||(33544178-33544275)
chr2 (55-108)||(17375300-17375353)
chr2 (210-265)||(14950835-14950890)
chr2 (325-356)||(28165014-28165045)
[»] chr1 (16 HSPs)
chr1 (365-524)||(10494579-10494737)
chr1 (394-533)||(14351443-14351582)
chr1 (359-525)||(11814388-11814556)
chr1 (383-524)||(2077647-2077789)
chr1 (438-525)||(26842245-26842332)
chr1 (437-522)||(25537495-25537578)
chr1 (437-525)||(27787015-27787103)
chr1 (46-108)||(11814836-11814898)
chr1 (443-525)||(29099319-29099401)
chr1 (52-108)||(32058699-32058755)
chr1 (46-104)||(14350985-14351043)
chr1 (61-108)||(39709050-39709097)
chr1 (437-476)||(47896550-47896589)
chr1 (62-108)||(34655001-34655047)
chr1 (55-108)||(11408031-11408084)
chr1 (210-258)||(2077483-2077531)
[»] chr7 (10 HSPs)
chr7 (383-524)||(43047918-43048059)
chr7 (383-524)||(24717788-24717929)
chr7 (424-524)||(26711907-26712008)
chr7 (437-524)||(21590811-21590898)
chr7 (437-514)||(32979011-32979088)
chr7 (437-499)||(34293787-34293849)
chr7 (437-480)||(36582668-36582711)
chr7 (437-499)||(10365596-10365657)
chr7 (210-265)||(31038997-31039052)
chr7 (234-264)||(21590666-21590696)
[»] chr5 (17 HSPs)
chr5 (358-533)||(12156012-12156197)
chr5 (383-524)||(40600110-40600251)
chr5 (383-524)||(42269031-42269172)
chr5 (372-483)||(34574418-34574529)
chr5 (296-516)||(11470621-11470847)
chr5 (437-525)||(24867362-24867450)
chr5 (372-483)||(39938569-39938679)
chr5 (441-524)||(26331356-26331439)
chr5 (401-483)||(30248410-30248492)
chr5 (437-524)||(26331693-26331780)
chr5 (209-265)||(12156352-12156408)
chr5 (208-263)||(26331215-26331270)
chr5 (61-108)||(27170141-27170188)
chr5 (400-483)||(42221192-42221275)
chr5 (62-108)||(7767058-7767104)
chr5 (303-356)||(34574371-34574424)
chr5 (210-269)||(40599991-40600051)
[»] chr8 (11 HSPs)
chr8 (383-524)||(5515062-5515203)
chr8 (437-526)||(15050314-15050401)
chr8 (437-522)||(10181847-10181932)
chr8 (413-524)||(3763247-3763358)
chr8 (465-523)||(39580354-39580412)
chr8 (55-108)||(5994653-5994706)
chr8 (55-108)||(10408848-10408901)
chr8 (209-265)||(15050161-15050217)
chr8 (325-356)||(25142811-25142842)
chr8 (210-263)||(5994484-5994537)
chr8 (215-259)||(3763045-3763089)
[»] scaffold0974 (1 HSPs)
scaffold0974 (387-524)||(2637-2774)
[»] chr4 (8 HSPs)
chr4 (358-523)||(52635427-52635601)
chr4 (437-525)||(45872905-45872993)
chr4 (358-486)||(55728445-55728582)
chr4 (55-108)||(6410014-6410067)
chr4 (208-265)||(45873099-45873156)
chr4 (209-265)||(55728689-55728745)
chr4 (437-523)||(42677875-42677961)
chr4 (209-265)||(14441112-14441168)
[»] scaffold0027 (3 HSPs)
scaffold0027 (372-483)||(2672-2783)
scaffold0027 (304-356)||(2777-2829)
scaffold0027 (233-265)||(2935-2967)
[»] chr3 (7 HSPs)
chr3 (405-524)||(31698978-31699097)
chr3 (452-525)||(46743176-46743249)
chr3 (428-480)||(3460750-3460802)
chr3 (485-533)||(52984633-52984680)
chr3 (394-465)||(31625722-31625792)
chr3 (61-108)||(43276002-43276049)
chr3 (358-396)||(52984572-52984610)
[»] scaffold0005 (1 HSPs)
scaffold0005 (437-499)||(269761-269822)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 208 - 533
Target Start/End: Complemental strand, 30845480 - 30845155
Alignment:
Q  208 tgttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtgatggctaatggcggtggttatgnnnnnnngtgggttttcaaa 307  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  30845480 tgttttcggtgaggattagtgaagaattttgtggtggttaatgatagttttggtggtgatggctaatggcggtggttatgtttttttgtgggttttcaaa 30845381  T
Q  308 tacatggatatttgagggtgtagcttgtttcaagaattgagctatgtgtcattttgtggggtggtatgtgttttctaggtggtgattttacttgtgctta 407  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30845380 tacatggatatttgagggtgtagtttgtttcaagaattgagctatgtgtcattttgtggggtggtatgtgttttctaggtggtgattttacttgtgctta 30845281  T
Q  408 actgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaaga 507  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30845280 actgcgctcaactgtagaagagaagcaaggtgcggttacctggatttttggtaggtttgatggttattttggaggggttttgcaacggtttgacacaaga 30845181  T
Q  508 tttgtttctgctattgcgtgggtgtt 533  Q
    ||||||||||||||||||||||||||    
T  30845180 tttgtttctgctattgcgtgggtgtt 30845155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 30845673 - 30845580
Alignment:
Q  15 cataggtgcagatggattgatcacaaaagtggtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30845673 cataggtgcagatggatcggtcacaaaagtggtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 30845580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 358 - 525
Target Start/End: Original strand, 24350393 - 24350570
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt----------acttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttaca 447  Q
    |||||||||||| ||||||||||||| ||||||||||||          ||  |||||||| |||||||||||  ||||||||||||||||| | |||||    
T  24350393 attttgtggggttgtatgtgttttcttggtggtgattttttgggtgtttacacgtgcttaattgcgctcaactacagaagagaagcaatgtgtgattaca 24350492  T
Q  448 tggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
     |  ||||| ||| |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  24350493 cgagtttttggtaagtttgatggttattttggaggggttttgcaacggtttagcacaaaatttgtttctgctattgcg 24350570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 10670293 - 10670381
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  10670293 gtgcggttacatggatttttagtagatttgatagttattttggagaggtttttcaacggtttgacacaagatttgtttctgctattgcg 10670381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 405 - 524
Target Start/End: Complemental strand, 10772754 - 10772636
Alignment:
Q  405 ttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacaca 504  Q
    ||||||||| ||||||  |||||||||||||  ||| |||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  10772754 ttaactgcgttcaactacagaagagaagcaaa-tgcagttacacgggtttttggtaggtttgatggttattttggatgggttttgcaacggtttggcaca 10772656  T
Q  505 agatttgtttctgctattgc 524  Q
    ||| |||||||||| |||||    
T  10772655 agacttgtttctgccattgc 10772636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 394 - 533
Target Start/End: Complemental strand, 24843058 - 24842920
Alignment:
Q  394 tttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaac 493  Q
    ||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||| || ||||| ||||||||||||||| ||||||| ||||||  ||||    
T  24843058 tttacatgtgcttaattgcgctcaactgcagaagagaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttgga-gggtttaacaac 24842960  T
Q  494 ggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
     ||||  |||||||||||||| ||||| |||  |||||||    
T  24842959 agtttagcacaagatttgtttttgctactgctcgggtgtt 24842920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 372 - 444
Target Start/End: Original strand, 32747853 - 32747925
Alignment:
Q  372 tatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggtt 444  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||| ||||||||    
T  32747853 tatgtgttttctaggtggtgattttacctgtgattaattgcgctcaactgcagaagagaagcaaggtgcggtt 32747925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 437 - 499
Target Start/End: Complemental strand, 9566703 - 9566641
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttg 499  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||  |||||  |||||||||    
T  9566703 gtgcggttacatgggtttttggtaggtttgatggttattttggagatgttttttaacggtttg 9566641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 499
Target Start/End: Complemental strand, 11366628 - 11366564
Alignment:
Q  434 aatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttg 499  Q
    ||||||||||||||||  ||||| |||||||||||||||| ||||||| ||||||  |||||||||    
T  11366628 aatgtgcggttacatgagtttttggtaggtttgatggtta-tttggagaggttttttaacggtttg 11366564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 32747828 - 32747859
Alignment:
Q  325 gtgtagcttgtttcaagaattgagctatgtgt 356  Q
    ||||||||||||||||||||||||||||||||    
T  32747828 gtgtagcttgtttcaagaattgagctatgtgt 32747859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 394 - 533
Target Start/End: Original strand, 14951089 - 14951228
Alignment:
Q  394 tttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaac 493  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||| |  ||||| ||||||||||||||||||||||||||||||||||||    
T  14951089 tttacatgtgcttaattgcgctcaactgcagaagagaagcaatgtgcgattacacgagtttttggtaggtttgatggttattttggaggggttttgcaac 14951188  T
Q  494 ggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  14951189 ggtttggcacaagatttgtttctgctattgcgcgggtgtt 14951228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 533
Target Start/End: Original strand, 6186478 - 6186662
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt---------acttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacat 448  Q
    |||||||||||| ||||||||| | ||||||||||||||         || | ||||||| |||||||||||| |||||||||| || ||||| |||||     
T  6186478 attttgtggggttgtatgtgttgtttaggtggtgatttttgggtgtttacatttgcttaattgcgctcaactgcagaagagaagtaaagtgcgattacac 6186577  T
Q  449 ggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
    |  ||||| ||| |||||||  |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  6186578 gagtttttggtaagtttgataattattttgaaggggttttgcaacggtttgacacaagatttgtttttgctattgcgcgggtgtt 6186662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 394 - 520
Target Start/End: Original strand, 38531611 - 38531736
Alignment:
Q  394 tttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaac 493  Q
    ||||| |||||||||||| ||||||||| |||||| |||||| ||||||||||| || ||||| ||||||||||||||| ||||||| ||||||||||||    
T  38531611 tttacatgtgcttaactgtgctcaactgcagaagaaaagcaaggtgcggttacacgggtttttggtaggtttgatggttcttttgga-gggttttgcaac 38531709  T
Q  494 ggtttgacacaagatttgtttctgcta 520  Q
     ||||  ||||||||||||||||||||    
T  38531710 agtttagcacaagatttgtttctgcta 38531736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 405 - 524
Target Start/End: Complemental strand, 9910477 - 9910358
Alignment:
Q  405 ttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacaca 504  Q
    |||||| |||||||||| ||||||||| ||| || |||||||| |  ||||| ||||| ||||| |||||||| || |||||||||||||||||| ||||    
T  9910477 ttaacttcgctcaactgcagaagagaaacaaagtacggttacacgagtttttggtaggattgatagttatttttgatgggttttgcaacggtttgtcaca 9910378  T
Q  505 agatttgtttctgctattgc 524  Q
    ||| ||||||||||||||||    
T  9910377 agacttgtttctgctattgc 9910358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 27888643 - 27888556
Alignment:
Q  438 tgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||||||||||  ||||| ||||||| |||||||||||||||| ||||||  || ||||||||||||||||||||||| ||||||||    
T  27888643 tgcggttacatgagtttttggtaggttcgatggttattttggagaggttttttaaaggtttgacacaagatttgtttctactattgcg 27888556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 1533170 - 1533082
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||| |||||||| ||| | ||| |||||||||||||||||||| ||||||  || |||||| |||||||||||||||||||||||||    
T  1533170 gtgcgattacatgggtttatggtaagtttgatggttattttggagaggttttttaatggtttggcacaagatttgtttctgctattgcg 1533082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 516
Target Start/End: Complemental strand, 40900093 - 40900017
Alignment:
Q  440 cggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttct 516  Q
    ||||||||||||||||| |||||||| |||| |||||||||| ||||||   |||||||| ||||||||||||||||    
T  40900093 cggttacatggatttttggtaggtttcatggatattttggagaggtttttttacggtttggcacaagatttgtttct 40900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 38531228 - 38531286
Alignment:
Q  46 gtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtg 104  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  38531228 gtgtctgcatatgatctgttatggttttgatggattttttgttgtgttggtttgtggtg 38531286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 14950300 - 14950353
Alignment:
Q  51 tgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtg 104  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  14950300 tgcatattatctgttatggttttgatgaattttttgttgtgttggtttgtggtg 14950353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 33544275 - 33544178
Alignment:
Q  386 gtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggg 483  Q
    ||||||||||||| ||| ||||| |||| | ||||| |||||| |||||| |||||| | || || ||||| ||||| ||||||||||||||||||||    
T  33544275 gtggtgattttacatgttcttaattgcgttgaactgcagaagataagcaaggtgcggctgcacgggtttttggtagggttgatggttattttggaggg 33544178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 17375353 - 17375300
Alignment:
Q  55 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  17375353 tatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttc 17375300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 14950835 - 14950890
Alignment:
Q  210 ttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    |||| ||||||||||||||  |  ||||||||||||||||| ||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtggtg 14950890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 356
Target Start/End: Original strand, 28165014 - 28165045
Alignment:
Q  325 gtgtagcttgtttcaagaattgagctatgtgt 356  Q
    ||||||||||||||||||||||||||||||||    
T  28165014 gtgtagcttgtttcaagaattgagctatgtgt 28165045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 10494737 - 10494579
Alignment:
Q  365 ggggtggtatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtt 464  Q
    |||||| |||||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||  || ||||||||||| |||||||| |||||||    
T  10494737 ggggtgttatgtgttttctaggtggtgattt-acatgtgcttaactacgctcaactgcagaagagaaagaaagtgcggttacacggatttttggtaggtt 10494639  T
Q  465 tgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    |||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||||||    
T  10494638 tgatggttattttataggggttttgcaatggtttggcacaagatttgtttctgctattgc 10494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 394 - 533
Target Start/End: Original strand, 14351443 - 14351582
Alignment:
Q  394 tttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaac 493  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||| ||||  |  ||||| |||||||||||||||||||||||||||||||||||     
T  14351443 tttacatgtgcttaattgcgctcaactgctgaagagaagcaatgtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaat 14351542  T
Q  494 ggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  14351543 ggtttggcacaagatttgtttctgctattgcgcgggtgtt 14351582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 11814556 - 11814388
Alignment:
Q  359 ttttgtggggtggtatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttag 458  Q
    ||||||||| || |||||||||||||||| ||||||||||  ||| |||||||   ||||||| ||||||||||||| |||| |||||| ||||||||      
T  11814556 ttttgtgggttgctatgtgttttctaggtagtgattttacccgtggttaactgtaatcaactgcagaagagaagcaaagtgcagttacacggattttttt 11814457  T
Q  459 --taggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
      ||||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||||||||||||    
T  11814456 gctaggtttgatggttactttggaggggttttgcaacagttaggcacaagatttatttctgctattgcg 11814388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 383 - 524
Target Start/End: Original strand, 2077647 - 2077789
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctc--aactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttgga 480  Q
    |||||||||||||||| | ||||||| ||||| |  ||||| |||||| ||| || ||||||||||| ||| |||| |||||||||||| ||||||||||    
T  2077647 taggtggtgattttacctatgcttaattgcgcgctgaactgcagaagaaaagtaaagtgcggttaca-ggagttttggtaggtttgatgattattttgga 2077745  T
Q  481 ggggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
     |||||||||||||||||  ||||||| |||||| |||||||||    
T  2077746 tgggttttgcaacggttttgcacaagacttgtttatgctattgc 2077789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 438 - 525
Target Start/End: Original strand, 26842245 - 26842332
Alignment:
Q  438 tgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||| ||||||| ||||| |||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||| ||||||||    
T  26842245 tgcgggtacatgggtttttggtaggtttgatggttagtttggagaggtttttcaacggtatgacacaagatttgtttctcctattgcg 26842332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 25537578 - 25537495
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctatt 522  Q
    |||||||||||||  ||||| ||||||||||||||||||  |||| |||||| ||||||| |||||||||||||||||||||||||    
T  25537578 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctatt 25537495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 27787015 - 27787103
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| ||||||  || |||||| |  ||||||||||||||||||||||    
T  27787015 gtgcagttacatgggtttttggtaggtttgatggttattttggagaggttttttaatggtttggcttaagatttgtttctgctattgcg 27787103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 11814898 - 11814836
Alignment:
Q  46 gtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  11814898 gtgtctgcatatgatctgttatggttttgatgaaattttggttgtgtttgtttgtggtgcttc 11814836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 443 - 525
Target Start/End: Complemental strand, 29099401 - 29099319
Alignment:
Q  443 ttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||||||| |||| ||| |||||||||||||||||||| |||||| ||||| | || ||||| |||||||| ||||||||||    
T  29099401 ttacatggacttttggtaagtttgatggttattttggagaggtttttcaacgatatggcacaaaatttgtttatgctattgcg 29099319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 32058755 - 32058699
Alignment:
Q  52 gcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||    
T  32058755 gcatatgatatgttatggtttagatggatttttggctgtgttggtttatggtgcttc 32058699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 14350985 - 14351043
Alignment:
Q  46 gtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttggtttatggtg 104  Q
    |||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  14350985 gtgtctgcgtatgatctattatggttttgatgaattttttgttgtgttggtttgtggtg 14351043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 39709050 - 39709097
Alignment:
Q  61 ctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  39709050 ctgttatggttttgatggatctttggttgtgttggtttgtggtgcttc 39709097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Complemental strand, 47896589 - 47896550
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattt 476  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  47896589 gtgcggttacatgggtttttggtaggtttgatggttattt 47896550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 34655047 - 34655001
Alignment:
Q  62 tgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||||||||||||| || |||| |||||||||||| |||||||||    
T  34655047 tgttatggttttgatgcatctttgattgtgttggtttgtggtgcttc 34655001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 11408031 - 11408084
Alignment:
Q  55 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||| ||||||||||| ||  ||| ||||||||||||||||| |||||||||    
T  11408031 tatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttc 11408084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  210 ttttcggtgaggattaatgaagaattttgtggtggttaatgatagtttt 258  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 383 - 524
Target Start/End: Original strand, 43047918 - 43048059
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggagg 482  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||  ||||||| ||||||||||||||||||||||| |    
T  43047918 taggtggtgattttactcgtgcttaactgcgctcaactgcagaagagaaacaaagtgcggttacacagatttttggtaggtttgatggttattttggatg 43048017  T
Q  483 ggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    | |||||||||||||| ||||||||||||||| |||||||||    
T  43048018 gattttgcaacggttttacacaagatttgtttatgctattgc 43048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 383 - 524
Target Start/End: Complemental strand, 24717929 - 24717788
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggagg 482  Q
    ||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||||| |    
T  24717929 taggtcgtgattttacttgtgcttaactgcgctcaactgcaaaagagaagcaaagtgcggttacctggttttttggtaggattgatggttattttggatg 24717830  T
Q  483 ggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||    
T  24717829 ggttttgcaactgtttggcacaagacttgtttctactattgc 24717788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 424 - 524
Target Start/End: Complemental strand, 26712008 - 26711907
Alignment:
Q  424 gaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacac-aagatttgtttctgctatt 522  Q
    |||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||| |||||||||| ||| |||||||||||| ||||||    
T  26712008 gaagagaatcaaggtgcggttacatgggtttttggtaggtttgatggttattttagagggatttttcaacggtttggcactaagatttgtttccgctatt 26711909  T
Q  523 gc 524  Q
    ||    
T  26711908 gc 26711907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 437 - 524
Target Start/End: Original strand, 21590811 - 21590898
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||| | |||| | |||||||| ||||||||||||||||||||||||    
T  21590811 gtgcggttagatggatttttggtaggtttgttggttattttggagagatttttctacggtttggcacaagatttgtttctgctattgc 21590898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 437 - 514
Target Start/End: Complemental strand, 32979088 - 32979011
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgttt 514  Q
    |||||||||||||| ||||| || ||||||||||||||||||||| ||||||  ||| ||||| ||||||||||||||    
T  32979088 gtgcggttacatgggtttttggtgggtttgatggttattttggagaggttttttaacagtttggcacaagatttgttt 32979011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 437 - 499
Target Start/End: Original strand, 34293787 - 34293849
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttg 499  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||||||    
T  34293787 gtgcggttacatggatttttggtaggtttgatggttattttggagatgttttttaacggtttg 34293849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 36582711 - 36582668
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttgga 480  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  36582711 gtgcggttacatgggtttttggtaggtttgatggttattttgga 36582668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 499
Target Start/End: Complemental strand, 10365657 - 10365596
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttg 499  Q
    |||||||||||||| ||||| |||||||||||||||| ||||||| ||||||  |||||||||    
T  10365657 gtgcggttacatgggtttttggtaggtttgatggtta-tttggagaggttttttaacggtttg 10365596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 31039052 - 31038997
Alignment:
Q  210 ttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    ||||||||||||| |||||  |  ||||||||||||||||| ||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtggtg 31038997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 21590666 - 21590696
Alignment:
Q  234 ttttgtggtggttaatgatagttttggtggt 264  Q
    |||||||||||||||||||||||||||||||    
T  21590666 ttttgtggtggttaatgatagttttggtggt 21590696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 358 - 533
Target Start/End: Complemental strand, 12156197 - 12156012
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt----------acttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttaca 447  Q
    |||||||||||| ||||||||||||||||||||||||||          |  ||||||||| ||||||||||||  |||||||||||| ||||| ||||     
T  12156197 attttgtggggttgtatgtgttttctaggtggtgatttttggggtgtttaaatgtgcttaattgcgctcaactgctgaagagaagcaaggtgcgattacg 12156098  T
Q  448 tggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
     |  ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  12156097 cgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttgacacaagatttgtttctgctattgcgcgggtgtt 12156012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 383 - 524
Target Start/End: Original strand, 40600110 - 40600251
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggagg 482  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||| |||| | |  ||||| ||||||||||||||||||||||| |    
T  40600110 taggtggtgattttaccagtgcttaactgcgctcaactgcagaagagaagcaaagtgcagttatacgagtttttggtaggtttgatggttattttggacg 40600209  T
Q  483 ggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    ||||||||||||||||| ||||||| |||||| |||||||||    
T  40600210 ggttttgcaacggtttggcacaagacttgtttttgctattgc 40600251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 383 - 524
Target Start/End: Original strand, 42269031 - 42269172
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggagg 482  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||  |  ||||| ||||| ||||||||||||||||| |    
T  42269031 taggtggtgattttacttgtgcttaactacgctcaactgcagaagagaagcaaagtgcggttacccgagtttttggtaggattgatggttattttggatg 42269130  T
Q  483 ggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    ||||||||||| ||||| ||||||| |||||||| |||||||    
T  42269131 ggttttgcaacagtttggcacaagacttgtttctactattgc 42269172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 372 - 483
Target Start/End: Original strand, 34574418 - 34574529
Alignment:
Q  372 tatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggt 471  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||| || |  ||||| ||||||||||||||    
T  34574418 tatgtgttttctaggtggtgattttacctgtgtttaattgcgctcaactgtagaagagaagcaaggtgcggttgcacgattttttggtaggtttgatggt 34574517  T
Q  472 tattttggaggg 483  Q
    ||||||||||||    
T  34574518 tattttggaggg 34574529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 516
Target Start/End: Complemental strand, 11470847 - 11470621
Alignment:
Q  296 tgggttttcaaatacatggatatttgagggtgtagcttgtttcaagaattgagctatgtgt-ca------ttttgtggggtggtatgtgttttctaggtg 388  Q
    ||||||||||||||||||||| || || |||||||||||||| ||||||||| |||| ||| ||      |||||| || ||||| ||||||| ||||||    
T  11470847 tgggttttcaaatacatggattttagacggtgtagcttgttttaagaattga-ctatttgttcaatgtggttttgtaggatggtacgtgttttttaggtg 11470749  T
Q  389 gtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggtttt 488  Q
    ||||||||  | | | ||  ||  |||||| || | ||||||| ||||||| ||||||| |  ||||| ||||||||||| | ||||||| |||||||||    
T  11470748 gtgatttttttggcgtttgcctatgctcaaatgcaaaagagaaacaatgtgtggttacacgagtttttggtaggtttgatagctattttgaaggggtttt 11470649  T
Q  489 gcaacggtttgacacaagatttgtttct 516  Q
    ||||||||||| ||||||||||||||||    
T  11470648 gcaacggtttggcacaagatttgtttct 11470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 24867362 - 24867450
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    |||||||||||||| |||||| || |||||||||||||||||||| || ||| |||||| ||| |||||||||||||| ||||||||||    
T  24867362 gtgcggttacatgggtttttaatatgtttgatggttattttggagaggattttcaacggattggcacaagatttgtttatgctattgcg 24867450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 483
Target Start/End: Complemental strand, 39938679 - 39938569
Alignment:
Q  372 tatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggt 471  Q
    ||||||||||||||||||||||||||| || |||||| |||  | | ||| | ||||||||||| |||||||| ||  | ||||| ||||||||||||||    
T  39938679 tatgtgttttctaggtggtgattttacctgggcttaaatgcattgagctgcataagagaagcaaggtgcggttgcacaggttttt-gtaggtttgatggt 39938581  T
Q  472 tattttggaggg 483  Q
    ||||||||||||    
T  39938580 tattttggaggg 39938569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 26331356 - 26331439
Alignment:
Q  441 ggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    |||||||||||||||| |||||||||||| ||||||| |||  ||||| ||||| |||   ||||||||||||| |||||||||    
T  26331356 ggttacatggatttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgc 26331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 30248492 - 30248410
Alignment:
Q  401 gtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggg 483  Q
    |||||||| |||||||||||| ||||||||||||| || ||||| || |  ||||| |||||||||| ||||||||| |||||    
T  30248492 gtgcttaattgcgctcaactgcagaagagaagcaaggtacggttgcacgattttttggtaggtttgaaggttattttagaggg 30248410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 524
Target Start/End: Original strand, 26331693 - 26331780
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    |||||||||||||  ||||| |||||||||||| ||||||| |||  ||||| ||||| |||   ||||||||||||| |||||||||    
T  26331693 gtgcggttacatgagtttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgc 26331780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 12156408 - 12156352
Alignment:
Q  209 gttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    ||||| |||||| |||||||| |  |||||||||||||| |||||||||||||||||    
T  12156408 gtttttggtgagaattaatgatggtttttgtggtggttagtgatagttttggtggtg 12156352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 26331215 - 26331270
Alignment:
Q  208 tgttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtgg 263  Q
    |||||| ||||||||||||||  |  ||||||||||||||||| ||||||||||||    
T  26331215 tgtttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtgg 26331270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 27170141 - 27170188
Alignment:
Q  61 ctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||||||||| |||| || ||||||||||||||||| |||||||||    
T  27170141 ctgttatggtttcgatggatctttggttgtgttggtttgtggtgcttc 27170188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 42221275 - 42221192
Alignment:
Q  400 tgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggg 483  Q
    |||||||||  ||| ||||||| ||| ||||||||| |||||||| ||    ||||| ||||||||||| ||||||||||||||    
T  42221275 tgtgcttaatggcgttcaactgcagatgagaagcaaggtgcggttgcacaagtttttggtaggtttgatagttattttggaggg 42221192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 7767058 - 7767104
Alignment:
Q  62 tgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||||||||| |||| || ||||||||||||||||| |||||||||    
T  7767058 tgttatggtttcgatggatctttggttgtgttggtttgtggtgcttc 7767104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 34574371 - 34574424
Alignment:
Q  303 tcaaatacatggatatttgagggtgtagcttgtttcaagaattgagctatgtgt 356  Q
    |||||||||||||| || ||   ||||||||||||||| |||||||||||||||    
T  34574371 tcaaatacatggatgttagacaatgtagcttgtttcaaaaattgagctatgtgt 34574424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 40599991 - 40600051
Alignment:
Q  210 ttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttg-gtggtgatgg 269  Q
    |||| ||||||||||||||  |  ||||||||||||||||| |||||||| ||||||||||    
T  40599991 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttgtgtggtgatgg 40600051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 383 - 524
Target Start/End: Complemental strand, 5515203 - 5515062
Alignment:
Q  383 taggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggagg 482  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||  || ||||| ||||| ||||||||||||||||| |    
T  5515203 taggtggtgattttacttgtgcttaactgcgctcaactgcagaagagaagcaaagtgcggttacccgggtttttggtaggattgatggttattttggatg 5515104  T
Q  483 ggttttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    | ||||||||| ||||| ||||||| |||||||| |||||||    
T  5515103 gattttgcaacagtttggcacaagacttgtttctactattgc 5515062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 526
Target Start/End: Original strand, 15050314 - 15050401
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcgt 526  Q
    |||||||||||||  ||||| ||||||||||||||||||  |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  15050314 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgcgt 15050401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 10181932 - 10181847
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctatt 522  Q
    |||||||||||||||||||| ||||||||||||| |||||||||| ||||||  ||||||||| |||| ||||||||| |||||||    
T  10181932 gtgcggttacatggatttttggtaggtttgatggctattttggagaggttttttaacggtttggcacatgatttgtttatgctatt 10181847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 413 - 524
Target Start/End: Original strand, 3763247 - 3763358
Alignment:
Q  413 gctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgt 512  Q
    ||||||||| |||||||||| || |||| |||| |  | ||||| ||||| |||||| |||||||||| | ||||||||| |||||| ||||||| ||||    
T  3763247 gctcaactgcagaagagaagaaaagtgcagttatacaggtttttggtaggattgatgattattttggatgagttttgcaatggtttggcacaagacttgt 3763346  T
Q  513 ttctgctattgc 524  Q
    ||||||||||||    
T  3763347 ttctgctattgc 3763358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 39580354 - 39580412
Alignment:
Q  465 tgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattg 523  Q
    ||||||||||||||||  | |||| ||||||||||||||||||||||||| ||||||||    
T  39580354 tgatggttattttggatagatttttcaacggtttgacacaagatttgtttatgctattg 39580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 5994706 - 5994653
Alignment:
Q  55 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  5994706 tatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttc 5994653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 10408901 - 10408848
Alignment:
Q  55 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  10408901 tatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttc 10408848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 15050161 - 15050217
Alignment:
Q  209 gttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    ||||| ||||||||||||||| |  ||||||||||||||||| ||||||||||||||    
T  15050161 gtttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtggtg 15050217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 356
Target Start/End: Complemental strand, 25142842 - 25142811
Alignment:
Q  325 gtgtagcttgtttcaagaattgagctatgtgt 356  Q
    ||||||||||||||||||||||||||||||||    
T  25142842 gtgtagcttgtttcaagaattgagctatgtgt 25142811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 5994537 - 5994484
Alignment:
Q  210 ttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtgg 263  Q
    |||| ||||||| ||||||  || ||||||||||||||||| ||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtgg 5994484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  215 ggtgaggattaatgaagaattttgtggtggttaatgatagttttg 259  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 387 - 524
Target Start/End: Original strand, 2637 - 2774
Alignment:
Q  387 tggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggtt 486  Q
    |||||||||||| |||||||||| ||||| ||||| ||||||||||||| |||||||||||||  ||||| ||||| |||||| ||||||| || ||| |    
T  2637 tggtgattttacctgtgcttaaccgcgctgaactgcagaagagaagcaaagtgcggttacatgagtttttggtaggattgatgattattttagatgggat 2736  T
Q  487 ttgcaacggtttgacacaagatttgtttctgctattgc 524  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  2737 ttgcaacggtttggcacaagacttgtttctgctattgc 2774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 358 - 523
Target Start/End: Complemental strand, 52635601 - 52635427
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt----------acttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttaca 447  Q
    |||||||||||| ||||||||||||||||||||||||||          || |||| |||| ||| |||| ||| ||||||||||||||||| | |||||    
T  52635601 attttgtggggttgtatgtgttttctaggtggtgattttttggttgtttacatgtgtttaattgcactcacctgcagaagagaagcaatgtgtgattaca 52635502  T
Q  448 tggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattg 523  Q
     |  ||||| ||||||||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||    
T  52635501 cgagtttttggtaggtttgatggttattttgga-ggattttgcaacgatttggcacaagatttgtttctgctattg 52635427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 45872993 - 45872905
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    |||||||||| ||| ||||| ||||||||| ||||||||||||||  |||||||||||||||   ||||||||||||||||||||||||    
T  45872993 gtgcggttacgtgggtttttggtaggtttggtggttattttggagacgttttgcaacggtttcgtacaagatttgtttctgctattgcg 45872905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 55728582 - 55728445
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt----------acttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttaca 447  Q
    |||||||||| | ||||||||||||||||||||||||||          || |||| |||| |||||||||||| |||||| |||||| ||||| |||||    
T  55728582 attttgtgggtttgtatgtgttttctaggtggtgatttttcgggtgtttacatgtgtttaattgcgctcaactgcagaagaaaagcaaagtgcgattaca 55728483  T
Q  448 tggatttttagtaggtttgatggttattttggaggggtt 486  Q
     | | |||| |||||||||||||||||||||||||||||    
T  55728482 cg-agttttggtaggtttgatggttattttggaggggtt 55728445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 6410067 - 6410014
Alignment:
Q  55 tatgatctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||||| ||||||||| ||||||| || |||||||||||||| |||||||||    
T  6410067 tatgatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttc 6410014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 45873156 - 45873099
Alignment:
Q  208 tgttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    |||||| ||||||||||||||  |  ||||||||||||||||| ||||||||||||||    
T  45873156 tgtttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtggtg 45873099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 55728745 - 55728689
Alignment:
Q  209 gttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    ||||| ||||||||||||||  |  |||||||||||||||||||| |||||||||||    
T  55728745 gtttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtggtg 55728689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 523
Target Start/End: Original strand, 42677875 - 42677961
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattg 523  Q
    |||||||||||||  ||| | |||||||| |||||||||||| || |||||| |||| |||||  ||||||||| ||| || |||||    
T  42677875 gtgcggttacatgagtttgtggtaggtttcatggttattttgaagaggtttttcaacagtttggtacaagatttttttatgttattg 42677961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 14441168 - 14441112
Alignment:
Q  209 gttttcggtgaggattaatgaagaattttgtggtggttaatgatagttttggtggtg 265  Q
    ||||| ||||||||||||||  |  ||||||| ||||||||| ||||||||||||||    
T  14441168 gtttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtggtg 14441112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 483
Target Start/End: Complemental strand, 2783 - 2672
Alignment:
Q  372 tatgtgttttctaggtggtgattttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggt 471  Q
    |||||||||||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||||| |||| ||| || | |||||| ||||||||||||||    
T  2783 tatgtgttttctagatggtgattttacttgcgcttaattgccctcaactgcagaagagaagcaaggtgcagttgcaagaatttttggtaggtttgatggt 2684  T
Q  472 tattttggaggg 483  Q
    ||||||||||||    
T  2683 tattttggaggg 2672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 2829 - 2777
Alignment:
Q  304 caaatacatggatatttgagggtgtagcttgtttcaagaattgagctatgtgt 356  Q
    ||||||||||||| || || || ||||||||||||||||||||||||||||||    
T  2829 caaatacatggatgttagacggcgtagcttgtttcaagaattgagctatgtgt 2777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 2967 - 2935
Alignment:
Q  233 attttgtggtggttaatgatagttttggtggtg 265  Q
    |||||||||||||||||| ||||||||||||||    
T  2967 attttgtggtggttaatggtagttttggtggtg 2935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 405 - 524
Target Start/End: Complemental strand, 31699097 - 31698978
Alignment:
Q  405 ttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttgacaca 504  Q
    ||||||||||||||||| ||||||||||||  ||||||||||| || ||||| ||||| || |||||||||||||| |||||||||||| ||||||||||    
T  31699097 ttaactgcgctcaactgcagaagagaagcagagtgcggttacacgggtttttggtaggattcatggttattttggatgggttttgcaacagtttgacaca 31698998  T
Q  505 agatttgtttctgctattgc 524  Q
    ||| |||||| || ||||||    
T  31698997 agacttgtttatgttattgc 31698978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 46743176 - 46743249
Alignment:
Q  452 tttttagtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcg 525  Q
    ||||| |||||||||||||||||||||||  ||||||  || |||||| |||||||||||||||||||||||||    
T  46743176 tttttggtaggtttgatggttattttggataggttttttaatggtttggcacaagatttgtttctgctattgcg 46743249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 3460750 - 3460802
Alignment:
Q  428 agaagcaatgtgcggttacatggatttttagtaggtttgatggttattttgga 480  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||||||||    
T  3460750 agaagcaaagtgcggttgcacggatttttggtaggtttgatggttattttgga 3460802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 52984633 - 52984680
Alignment:
Q  485 ttttgcaacggtttgacacaagatttgtttctgctattgcgtgggtgtt 533  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||||    
T  52984633 ttttgcaacg-tttggcacaagatttgtttctgctattgcgcgggtgtt 52984680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 465
Target Start/End: Complemental strand, 31625792 - 31625722
Alignment:
Q  394 tttacttgtgcttaactgcgctcaactgtagaagagaagcaatgtgcggttacatggatttttagtaggttt 465  Q
    ||||| ||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||| ||||||||    
T  31625792 tttacatgtgcttaactgc-ctcaaccgcaaaagagaagtaaggtgcggttacatgggtttttggtaggttt 31625722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 43276049 - 43276002
Alignment:
Q  61 ctgttatggttttgatgaatttttggttgtgttggtttatggtgcttc 108  Q
    |||||||| ||| ||||||| ||||||||||||||||| |||||||||    
T  43276049 ctgttatgatttcgatgaatctttggttgtgttggtttgtggtgcttc 43276002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 52984572 - 52984610
Alignment:
Q  358 attttgtggggtggtatgtgttttctaggtggtgatttt 396  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  52984572 attttgtggggttgtatgtgttttttaggtggtgatttt 52984610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 499
Target Start/End: Complemental strand, 269822 - 269761
Alignment:
Q  437 gtgcggttacatggatttttagtaggtttgatggttattttggaggggttttgcaacggtttg 499  Q
    |||||||||||||| ||||| |||||||||||||||| ||||||| ||||||  |||||||||    
T  269822 gtgcggttacatgggtttttggtaggtttgatggtta-tttggagaggttttttaacggtttg 269761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University