View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_10 (Length: 315)
Name: NF17930_low_10
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 53280489 - 53280192
Alignment:
| Q |
1 |
gaactcaaaacatctgcgtatttagcaagcgctgttcttaaagtacagggtgggaaaggaggaggcaaggagcttccaccaagaggtttcccatcttcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53280489 |
gaactcaaaacatctgcgtatttagcaagcgctgttcttaaagtacagggtgggaaaggaggaggcaaggagcttccaccaagaggtttcccatcttcgt |
53280390 |
T |
|
| Q |
101 |
catcggtatggacggagaaataggtgtccggggacaaacctagtatcctttctgcctcttccacagtgtcggataaattctcacagtaaacaccaacatg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53280389 |
catcggtatggacggagaaataggtgtccggggacaaacctagtatcctttctgcctcttccacagtgtcggataaattctcacagtaaacaccaacatg |
53280290 |
T |
|
| Q |
201 |
gtcccctgtttcatatctgtga--aaaatatgatatgcataagaatnnnnnnnnnnnnnntgacagtacattatacaaacaattgtgtctctgcatgca |
297 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53280289 |
gtcccctgtttcatatctgtgaaaaaaatatgatatgcataagaat-aataaaaaaaaaatgacagtacattatacaaacaattgtgtctctgcatgca |
53280192 |
T |
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