View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_11 (Length: 313)
Name: NF17930_low_11
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 52182434 - 52182129
Alignment:
| Q |
1 |
acactccacgttctctgtgctgcataaccgaaaagaaaatatacaagatagaaatataattgagaaagattagtggtagtagagcacgtaattaaaggca |
100 |
Q |
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| T |
52182434 |
acactccacgttctctgtgctgcgcaaccgaaaagaaaatatacaagatagaaatataattgagaaagattagtggtagtagagcacgtaattaaaggca |
52182335 |
T |
|
| Q |
101 |
ctagtgcactaagcattgagggggcgtttaatttttcaggaactttacttgaaccacgttcttgcaattttaacccgtgatat----attccatcttttg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
52182334 |
ctagtgcactaagcattgagggggcgtttaatttttcaggaactttacttgacccacgttcttgcaattttaacccgtgatatattaattccatcctttg |
52182235 |
T |
|
| Q |
197 |
catgctcattcttgcattcatcttgctccatcaactctgatgaaaattctccaaggtttgattttatgctttattcaaaatttcaaatatatttttactt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52182234 |
catgctcattcttgcattcatcttgctccatcaactctgatgaaaattctccaaggtttgattttatgctttattcaaaatttcaaatatctttttactt |
52182135 |
T |
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| Q |
297 |
attcat |
302 |
Q |
| |
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|||||| |
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| T |
52182134 |
attcat |
52182129 |
T |
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