View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_3 (Length: 508)
Name: NF17930_low_3
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_3 |
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| [»] scaffold0557 (1 HSPs) |
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| [»] scaffold0726 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Complemental strand, 29465698 - 29465209
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29465698 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagggatattaaattaaagattaatttaattttgatattggcatacacc |
29465599 |
T |
|
| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29465598 |
acgataggtagtcccttactttttctattgattaagttattatgtacactgaattacatatatggttaggatgtattaccaatttaattcaccaaatgat |
29465499 |
T |
|
| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactgaaaataca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29465498 |
ataatttggcttcaccaaaccagcccccaaaaaatattggttgattcctggcatccaaagaacttgatttcactcttttagccatggaactgaaaataca |
29465399 |
T |
|
| Q |
306 |
acataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatataaaaatgtggcaccaatgctccccatttcctnnnnnnnn |
405 |
Q |
| |
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||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29465398 |
acagaaactaaaaaaatacgaccgaaataggaaataattaatcaagagcagaccattatacaaaaatgtggcaccaatgctccccatttcctaaaaaaat |
29465299 |
T |
|
| Q |
406 |
nnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
495 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29465298 |
aaaaattgaatcaatagaaaaagtaatattaattctctatctccttgttcaagccatccctctagaatctatattccctctcatatcttc |
29465209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Original strand, 9531 - 10019
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9531 |
aatagacacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
9630 |
T |
|
| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9631 |
acgataggcagtcgcttacgttttctattgattaagttattatgtacactgagttacatatatggataggatgtattaccaatttatatcaccaaatgat |
9730 |
T |
|
| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactgaaaataca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9731 |
ataatttggcttcaccaaaccagcccccaaaaaatattggttgattcctggcatccaaagaacttgatttcactcttttagccatggaactgaaaataca |
9830 |
T |
|
| Q |
306 |
acataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatataaaaatgtggcaccaatgctccccatttcctnnnnnnnn |
405 |
Q |
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||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9831 |
acagaaact-aaaaaatacgaccgaaacagaaaataatcaatcaagagcagaccattatacaaaaatgtggcaccaatgctccccatttcctaaaaaaat |
9929 |
T |
|
| Q |
406 |
nnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
495 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9930 |
aaaaattgaatcaatagaaaaagtaacactaattctctatctccatgttcaagccatccctctagaatctatattccctctcatatcttc |
10019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 495
Target Start/End: Complemental strand, 2815 - 2342
Alignment:
| Q |
6 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcatagagagatattaaatcaaagattaatttaattttgatattggcatacacc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||| |
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| T |
2815 |
aataggcacaaatcaaatacattgaatttgaaaaagaaaatctaactcacagagagatattaaattaaagatta--------------ttgacatacacc |
2730 |
T |
|
| Q |
106 |
acgataggcagtcacttactttttctattgattaagttatcatgtacactgagttacatatatggataggatgtattaccaatttaattcaccaaatgat |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2729 |
acgataggcagtcgcttactttttctattgattaagttattatgtacactgagttacatat--ggataggatgtattaccaatttaattcaccaaatgat |
2632 |
T |
|
| Q |
206 |
ataatttggcttcaccaaaccagcccccaaaaaatattggttggttcctggcttctaaagaacttgatttcactcttttagccatggaactgaaaataca |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2631 |
ataatttggcttcaccaaaccagcccccaaaaaatattggctgattcctggcatccaaagaacttgatttcactcttttagccatggaactgaaaaaaca |
2532 |
T |
|
| Q |
306 |
acataaactnnnnnnntacgaccgaaataggaaataatcaatcaagagcagaccattatataaaaatgtggcaccaatgctccccatttcctnnnnnnnn |
405 |
Q |
| |
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||| ||||| ||||||||| | | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |
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| T |
2531 |
acagaaactaaaaaaatacgaccgagacaagaaataatcaatcaagagcagaccattatacaaaaatgtagcaccaatgctccccattttctaaaaaaat |
2432 |
T |
|
| Q |
406 |
nnnnnttgaattaatagaaaaagtaatactaattctctatctccatgttcaagccatccctctggaatctatattccctctcatatcttc |
495 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
2431 |
aaaaattgaatcaatagaaaaagtaatactaattctctatctccatgttcaagccatccctctagagtctatattccctctcatatcttc |
2342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 493
Target Start/End: Complemental strand, 9781951 - 9781893
Alignment:
| Q |
435 |
taattctctatctccatgttcaagccatccctctggaatctatattccctctcatatct |
493 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
9781951 |
taattctcaatctctatgttcaagccattcctcacgaatctataatccctctcatatct |
9781893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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