View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_4 (Length: 386)
Name: NF17930_low_4
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 5188291 - 5188663
Alignment:
| Q |
1 |
gggagaccaacccattcgataacttcactattatttttctttcttcttccnnnnnnnnn-ctccactattattgttggcatctactatttgctaaaagaa |
99 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
5188291 |
gggagaccaacc-attcgataacttcactattatttttctttcttcttccaaaaaaaaaactccactattattgttggcatctactatttgctaaaagga |
5188389 |
T |
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| Q |
100 |
tatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatattatgtcatcggaatattcc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188390 |
tatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatattatgtcatcggaatattcc |
5188489 |
T |
|
| Q |
200 |
ttgtaccnnnnnnnn-cgtagctgtcattttgatgaataaaataattcatatatactgtataggaagggatttggaatctgcatcaaacccttgcgtcgt |
298 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5188490 |
ttgtacctttttttttcgtagctgtcattttgatgaataaaataattcatatatactgtatag-aagggatttggaatctgcatcaaacccttgcgtcgt |
5188588 |
T |
|
| Q |
299 |
tgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatcaatatatatatt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188589 |
tgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatcaatatatatatt |
5188663 |
T |
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