View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_5 (Length: 377)
Name: NF17930_low_5
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 183 - 364
Target Start/End: Original strand, 410600 - 410781
Alignment:
| Q |
183 |
atttgaaattaatgatttatctgttaaccattcaaatgacatttctattttgtttgaacttggagcaggcagctcttgatgtgttcactgaggagcctcc |
282 |
Q |
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| T |
410600 |
atttgaaattaattagttatctgttaaccattcaaatgacatttctattttgtttgaacttggagcaggcagctcttgatgtgttcactgaggagcctcc |
410699 |
T |
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| Q |
283 |
agccaaagacagtaagttagtgcaacatgagaatgtgattgccactcctcatcttggagccagcaccaaagaagcacaggtt |
364 |
Q |
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| T |
410700 |
agccaaagacagtaagttagtgcaacatgagaatgtgattgctactcctcatcttggagccagcaccaaagaagcacaggtt |
410781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 410372 - 410530
Alignment:
| Q |
1 |
tcacatgcctctcactccaactactaacaaggtcttcaatgaaaacacttttgctaagatgaagaagggtgtgagaatcatcaatgttgctagaggtggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
410372 |
tcacatgcctctcactccaactactaacaaagtcttcaatgacaacacttttgctaagatgaagaatggtgtgagaatcatcaatgttgctagaggtggt |
410471 |
T |
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| Q |
101 |
gttattgatgaagatgctttagtcaaagctcttgatagtggaattgttgctcaggtcaa |
159 |
Q |
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| T |
410472 |
gttattgatgaagatgctttagtcaaagctcttgatagtggaattgttgctcaggtcaa |
410530 |
T |
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