View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_6 (Length: 376)
Name: NF17930_low_6
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 34229591 - 34229746
Alignment:
| Q |
198 |
tcattgcaactatttcttgctcaaacaaactggaaatctgcgagatgtcaacaatcaaaggggaagcaaaaacgcttcttgaagcaattcaaatggccat |
297 |
Q |
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| T |
34229591 |
tcattgcaactttttcttgctcaaacaaactggaaatctgcgagatgtcaacaatcaaaggggaagcaaaaacgcttcttgaagcaattcaaatggccat |
34229690 |
T |
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| Q |
298 |
caacaaggggctcgagagagtagtgtttgaacgcgactcacaagcagtactaaact |
353 |
Q |
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| T |
34229691 |
caacaaggggctcgagagagtagtgtttgaacgcgactcacaagtagtactaaact |
34229746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 198 - 353
Target Start/End: Original strand, 34237615 - 34237770
Alignment:
| Q |
198 |
tcattgcaactatttcttgctcaaacaaactggaaatctgcgagatgtcaacaatcaaaggggaagcaaaaacgcttcttgaagcaattcaaatggccat |
297 |
Q |
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|||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34237615 |
tcattggaactttttcttgctcaaacaaactggaaatctgtgagatgtcaacaatcaaaggggaagcaaaaacgcttcttgaagcaattcaaatggccat |
34237714 |
T |
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| Q |
298 |
caacaaggggctcgagagagtagtgtttgaacgcgactcacaagcagtactaaact |
353 |
Q |
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| T |
34237715 |
caacaaagggctcgagagagtagtgtttgaacgcgactcacaagtagtactaaact |
34237770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 34229376 - 34229551
Alignment:
| Q |
23 |
gtcatttgttatggagaatttgtcgaggctgcattccgactcgtccacgtttgtaactcgatgagttcaatgtacccctggttgtccactgtgagatcat |
122 |
Q |
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| T |
34229376 |
gtcatttgatatggagaacttttcgaggctgcattccgactcgtccacgtttataactcgatgagttcaatgtacccctggttgtccactgtgagatcat |
34229475 |
T |
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| Q |
123 |
gatctcgaagaggaattccacannnnnnnccattgtaccaatatcagacc-gtggacatatccagagaagaaagac |
197 |
Q |
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|||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34229476 |
gatctcgacgtggaattccacatatttttccattgtaccaatatcagacctgtggacatatccagagaagaaagac |
34229551 |
T |
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