View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_8 (Length: 331)
Name: NF17930_low_8
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 52053014 - 52052713
Alignment:
| Q |
20 |
ctgtttcccttgctcctctttgctgaatcagtattagtactattatcaattgtactgcaaccactattgctgctactagtagttgtagtagtcataaaat |
119 |
Q |
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| T |
52053014 |
ctgtttcccttgctcctctttgctgaatcagtattagtactattatcaattgtactgcaaccactattgctgctactagtagttgtagtagtcataaaat |
52052915 |
T |
|
| Q |
120 |
tatgcatgtttccatttgagttattagcttttgatgattctgttcttctgtgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatcc |
219 |
Q |
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| T |
52052914 |
tatgcatgtttccatttgagttattagcttttgatgattctgttcttctgtgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatcc |
52052815 |
T |
|
| Q |
220 |
acaaatagaacatgcatgcgttttagccttcgtcgttgatgtaagtattgaaccatgatgatcatcaccatcactagtcatctccatcaacctcggtttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52052814 |
acaaatagaacatgcatgcgttttagccttcgtcgttgatgtaagtattgaaccatgatgatcatcaccatcactagtcatctccatcaacctcggtttc |
52052715 |
T |
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| Q |
320 |
tt |
321 |
Q |
| |
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|| |
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| T |
52052714 |
tt |
52052713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 7687743 - 7687818
Alignment:
| Q |
170 |
tgtcttctcatgtgaccacccaaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgttttag |
245 |
Q |
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| T |
7687743 |
tgtctcctcatgtggccacctaaagcttgtcctattgcaaactccaatccacaaatagaacactcatgtgttttag |
7687818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 32504412 - 32504358
Alignment:
| Q |
191 |
aaagcttgtcctattccaaattctaatccacaaatagaacatgcatgcgttttag |
245 |
Q |
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||||||||||||||| |||| || |||||||||||||||||| || | ||||||| |
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| T |
32504412 |
aaagcttgtcctattgcaaactccaatccacaaatagaacattcaagtgttttag |
32504358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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