View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17930_low_9 (Length: 318)
Name: NF17930_low_9
Description: NF17930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17930_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 43102174 - 43102249
Alignment:
| Q |
17 |
aaaaacaatagttcagcaactttctttctttatgaatctagttccataaatagaacaacaacaatttcttcatccc |
92 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43102174 |
aaaaacaattgttcagcaactttctttctttatgaatctagttccataaacagaacaacaacaatttcttcatccc |
43102249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 43102434 - 43102467
Alignment:
| Q |
277 |
ctccatcttcatcttcttcttatatattttcttc |
310 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
43102434 |
ctccatcttcatcttcttctgatatattttcttc |
43102467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 42028524 - 42028448
Alignment:
| Q |
17 |
aaaaacaatagttcagcaactttctttctttatgaatctagttccataaatagaacaac-aacaatttcttcatccc |
92 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
42028524 |
aaaaacaatagttcaacaactttctttctttatgaatctagttccataaacagaacaactaacaatttcttcatccc |
42028448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 34039520 - 34039594
Alignment:
| Q |
17 |
aaaaacaatagttcagcaactttctttctttatgaatctagttccataaatagaacaacaacaatttcttcatccc |
92 |
Q |
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|
||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34039520 |
aaaaacaatagttcaacaacgt-ctttctttatgaatctagttccataaacagaacaacaacaatttcttcatccc |
34039594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 34039775 - 34039808
Alignment:
| Q |
277 |
ctccatcttcatcttcttcttatatattttcttc |
310 |
Q |
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|
|||||||||||||||||||| ||||||||||||| |
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|
| T |
34039775 |
ctccatcttcatcttcttctcatatattttcttc |
34039808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 42028284 - 42028251
Alignment:
| Q |
277 |
ctccatcttcatcttcttcttatatattttcttc |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
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|
| T |
42028284 |
ctccatcttcatcttcttctcatatattttcttc |
42028251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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