View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17931_high_1_N (Length: 485)
Name: NF17931_high_1_N
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17931_high_1_N |
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| [»] chr3 (10 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 86 - 485
Target Start/End: Complemental strand, 53431353 - 53430941
Alignment:
| Q |
86 |
cattgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcagggataggcaatgacacagaaaatgtt |
185 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
53431353 |
cattgaacaagaccaacaattctttttttgttagcccgatatcgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgtt |
53431254 |
T |
|
| Q |
186 |
ccaaaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacc |
285 |
Q |
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| T |
53431253 |
ccaaaaggaaaaaaaccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacc |
53431154 |
T |
|
| Q |
286 |
ctacttggagtgcctccgcaattagatcagccatcatgacctcaggtatatctgtcaactc-------------aatgtatgtatgtaaatgtaatccta |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53431153 |
ctacttggagtgcctccgcaattagatcagccatcatgacctcaggtatatctgtcaactcaatttccctataaaatgtatgtatgtaaatgtaatccta |
53431054 |
T |
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| Q |
373 |
tctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacacct |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431053 |
tctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacacct |
53430954 |
T |
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| Q |
473 |
tatgactatggag |
485 |
Q |
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| T |
53430953 |
tatgactatggag |
53430941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 89 - 325
Target Start/End: Original strand, 48374412 - 48374647
Alignment:
| Q |
89 |
tgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcagggataggcaatgacacagaaaatgttcca |
188 |
Q |
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| T |
48374412 |
tgaacaagaccaacaatactttctttgt-agcctgatattgcagcaccaggtgttaccattcttgcagcatggattggaaatgacgatgaaaatgttcca |
48374510 |
T |
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| Q |
189 |
aaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacccta |
288 |
Q |
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| T |
48374511 |
aagggaaaaaagcccttgccgtataaacttgaaaccggaacttccatgtcatgcccacatgtttcgggccttgcaggtagcatcaaatctaggaacccta |
48374610 |
T |
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| Q |
289 |
cttggagtgcctccgcaattagatcagccatcatgac |
325 |
Q |
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| T |
48374611 |
cttggagtgcctctgcaatcagatcagccatcatgac |
48374647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 53423684 - 53423456
Alignment:
| Q |
100 |
aacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcagggataggcaatgacacagaaaatgttccaaaaggnnnnnn |
199 |
Q |
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| T |
53423684 |
aacaattctttcttttgtagcccgatattgcagcaccaggtgttgccattcttgcagcatcgattgctaataatgtaactgatgttccaaaagggaaaaa |
53423585 |
T |
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| Q |
200 |
nccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcc |
299 |
Q |
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||||||||||||||| || ||||||||||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
53423584 |
gccatcaccatataactttaaatcagggacttctatgtcatgcccacatgtttcaggccttgcaggcagcattaaatctagaaaccctacttggagtgcc |
53423485 |
T |
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| Q |
300 |
tccgcaattagatcagccatcatgacctc |
328 |
Q |
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| T |
53423484 |
tctgcaatcagatcggccatcatgacctc |
53423456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 26095727 - 26095622
Alignment:
| Q |
228 |
acttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgacct |
327 |
Q |
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||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
26095727 |
acttccatgtcatgcccacatgtttcaggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgacct |
26095628 |
T |
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| Q |
328 |
caggta |
333 |
Q |
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| T |
26095627 |
ccggta |
26095622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 313
Target Start/End: Complemental strand, 53308435 - 53308221
Alignment:
| Q |
99 |
caacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcagggataggcaatgacacagaaaatgttccaaaaggnnnnn |
198 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| || |||| || ||||| | ||||||||||||| |
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| T |
53308435 |
caacaattctttcttttgtagcctgatattgcagcaccaggtgttgccattcttgcatcatggattggtaatgatgtaactgatgttccaaaagggaaaa |
53308336 |
T |
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| Q |
199 |
nnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgc |
298 |
Q |
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| T |
53308335 |
agccctcaccatataactttaaatcggggacttctatgtcatgccctcatgtttcaggcgttgcaggcagaattaaatttaaaaaccctatttggagtgc |
53308236 |
T |
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| Q |
299 |
ctccgcaattagatc |
313 |
Q |
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||| ||||| ||||| |
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| T |
53308235 |
ctctgcaatcagatc |
53308221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 53423068 - 53422979
Alignment:
| Q |
396 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggag |
485 |
Q |
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| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggag |
53422979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 26095415 - 26095328
Alignment:
| Q |
398 |
tttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggag |
485 |
Q |
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| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggag |
26095328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 26095824 - 26095757
Alignment:
| Q |
94 |
aagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcaggga |
162 |
Q |
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| T |
26095824 |
aagaccaaaaattctctctttgt-agcctgatattgcagcaccaggtgttaacattgttgcagcaggga |
26095757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 48374785 - 48374875
Alignment:
| Q |
395 |
ttttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggag |
485 |
Q |
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| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggag |
48374875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 485
Target Start/End: Complemental strand, 53307870 - 53307781
Alignment:
| Q |
396 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggag |
485 |
Q |
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| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggag |
53307781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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