View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17931_high_2 (Length: 363)
Name: NF17931_high_2
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17931_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 37704454 - 37704647
Alignment:
| Q |
29 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
128 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
37704553 |
T |
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| Q |
129 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaat |
222 |
Q |
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| T |
37704554 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaat |
37704647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 37698974 - 37699169
Alignment:
| Q |
30 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgaca |
127 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgaca |
37699073 |
T |
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| Q |
128 |
tttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
222 |
Q |
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| T |
37699074 |
tttggcaacaatattaattcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaat |
37699169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 37437520 - 37437713
Alignment:
| Q |
29 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacat |
128 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaa |
37437618 |
T |
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| Q |
129 |
ttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
222 |
Q |
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| T |
37437619 |
ttggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaat |
37437713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 37698636 - 37698697
Alignment:
| Q |
29 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
90 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 37698703 - 37698805
Alignment:
| Q |
113 |
tatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agacttt |
211 |
Q |
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| T |
37698703 |
tatagtgatatgacaattggcaacaatattaa--------caatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttt |
37698794 |
T |
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| Q |
212 |
ttgaacgtaat |
222 |
Q |
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| T |
37698795 |
tttaacgtaat |
37698805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 5052131 - 5051991
Alignment:
| Q |
223 |
gccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaac |
322 |
Q |
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| T |
5052131 |
gccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaac |
5052032 |
T |
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| Q |
323 |
taatagatatcaaatgtcatgtcccctcaatcttctcctcg |
363 |
Q |
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| T |
5052031 |
taatagatatcaaatgtcatgtcccctcaatcttctcctcg |
5051991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 16841109 - 16841043
Alignment:
| Q |
157 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaat |
222 |
Q |
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| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaat |
16841043 |
T |
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