View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17931_low_1 (Length: 552)
Name: NF17931_low_1
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17931_low_1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 39583898 - 39584449
Alignment:
| Q |
1 |
accattctcagcaagctcatcggcaacagaatttctttctcttacatgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttac |
100 |
Q |
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| T |
39583898 |
accattctcagcaagctcatcggcaacagaatttccttctcttacatgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttac |
39583997 |
T |
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| Q |
101 |
acatggcctccaagggaattaacttcggagtagtggctccttttccttcagtcatatcaatttcttcctcatttattcttttccaatcaaaacattgtat |
200 |
Q |
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| T |
39583998 |
acatggcctccaagggaattagcttcggagtagtggctccttttccttcagtcatatcaatttcttcctcacttattcttttccaatcaaaacattggat |
39584097 |
T |
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| Q |
201 |
aagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctcct |
300 |
Q |
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| T |
39584098 |
aagtaatgccaaagttaaactaactgtacgttgccctaagtttgctccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctcct |
39584197 |
T |
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| Q |
301 |
tctttgtcaaatctctctggcttgaattgtgttgggtcactccatagttgagaatctctgtgaattgcccaagcattaaccaataaaatagtgttttttg |
400 |
Q |
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| T |
39584198 |
tctttgtcaaatctctctggcttgaattgtgttgggtcactccatagttgagaatctctgtgaattgcccaagcattaaccaataaaatagtgttttttg |
39584297 |
T |
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| Q |
401 |
ggacattataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttg |
500 |
Q |
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| T |
39584298 |
ggacaatataacctcctatggtgcaatcttgtgaagaaaaatgaggagccaacaatgcaaatgcaggatgcaatcgaaatgtctcgtggattatattttg |
39584397 |
T |
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| Q |
501 |
taggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtcct |
552 |
Q |
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| T |
39584398 |
taggtaggggagttttgaaatgtctgactcttctactaagtgatcttgtcct |
39584449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 39572566 - 39572713
Alignment:
| Q |
45 |
catgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctcctttt |
144 |
Q |
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| T |
39572566 |
catgttttcaccggcttttagaaaaaccttgttgatgacatttgagcgagctatacacatggcctctaagggaattggctttggagtagtgactcctttt |
39572665 |
T |
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| Q |
145 |
ccttcagtcatatcaatttcttcctcatttattcttttccaatcaaaaca |
194 |
Q |
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| T |
39572666 |
ccttaactc--atcaatttctttctcacttattattttccaatcgaaaca |
39572713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 12151489 - 12151563
Alignment:
| Q |
246 |
tccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctgg |
320 |
Q |
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| T |
12151489 |
tccaggacaagcccttcttccaaaaccaaatgcaattaacttatttacctcaccttctttttcaaatctctctgg |
12151563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 38974762 - 38974843
Alignment:
| Q |
245 |
ctccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggcttgaa |
326 |
Q |
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| T |
38974762 |
ctcctggacaagcccttcttcctaacccaaatgcaatcaacttgtctaactctccttctttctcaaacctctcaggcttgaa |
38974843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 38931612 - 38931689
Alignment:
| Q |
246 |
tccaggacaagcccttcttcccaatccaaatggaatcaacttatcagcttctccttctttgtcaaatctctctggctt |
323 |
Q |
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| T |
38931612 |
tccagggcaacccctccttccaaaaccaaatgcaattaacttgtttgcttccccttctttttcaaatctctctggctt |
38931689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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