View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17931_low_2 (Length: 530)

Name: NF17931_low_2
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17931_low_2
NF17931_low_2
[»] chr4 (1 HSPs)
chr4 (53-391)||(53675518-53675860)
[»] chr6 (5 HSPs)
chr6 (469-515)||(27682680-27682726)
chr6 (469-513)||(27690001-27690045)
chr6 (469-513)||(30230240-30230284)
chr6 (469-515)||(13143892-13143939)
chr6 (469-515)||(17353669-17353716)
[»] chr2 (2 HSPs)
chr2 (469-515)||(31712532-31712578)
chr2 (469-515)||(39156533-39156579)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 53 - 391
Target Start/End: Original strand, 53675518 - 53675860
Alignment:
Q  53 agtgactaaccaagaacatgcacagcaacaatggtatcatttggattagctaaaactcttattgcccatgatagaagttccttgctatcatttggatcca 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53675518 agtgactaaccaagaacatgcacagcaacaatggtatcatttggattagctaaaactcttattgcccatgatagaagttccttgctatcatttgggtcca 53675617  T
Q  153 aagagagtccaatttgtattgtagaagaggaaggaagttccattttcaaatgcaaaagtgcagagaaaatggaattggaattatttggtatgttgttgat 252  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53675618 aagagagtccaattagtattgtagaagaggaaggaagttccattttcaaatgcaaaagtgcagagaaaatggaattggaattatttggtatgttgttgat 53675717  T
Q  253 tctggctcagctagcatataagaataagtagtgtatatatgtaaagaagagtatgattaaatttcagttagggtgtgaggccaaccatatagttgaattt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53675718 tctggctcagctagcatataagaataagtagtgtatatatgtaaagaagagtatgattaaatttcagttagggtgtgaggccaaccatatagttgaattt 53675817  T
Q  353 cattatacttgt----ttgagaagcataaatagcctttattgt 391  Q
    ||||||||||||    |||||||||||||||||||||||||||    
T  53675818 cattatacttgtttgattgagaagcataaatagcctttattgt 53675860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 27682680 - 27682726
Alignment:
Q  469 gcataacacttccctcattctttcttttcctcccgtagctctctctg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27682680 gcataacacttccctcattctttcttttcctcccgtagctctctctg 27682726  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 27690001 - 27690045
Alignment:
Q  469 gcataacacttccctcattctttcttttcctcccgtagctctctc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27690001 gcataacacttccctcattctttcttttcctcccgtagctctctc 27690045  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 513
Target Start/End: Complemental strand, 30230284 - 30230240
Alignment:
Q  469 gcataacacttccctcattctttcttttcctcccgtagctctctc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30230284 gcataacacttccctcattctttcttttcctcccgtagctctctc 30230240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 13143939 - 13143892
Alignment:
Q  469 gcataacacttccctcatt-ctttcttttcctcccgtagctctctctg 515  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  13143939 gcataacactttcctcatttctttcttttcctcccgtagctctctctg 13143892  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 17353669 - 17353716
Alignment:
Q  469 gcataacacttccctcatt-ctttcttttcctcccgtagctctctctg 515  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  17353669 gcataacacttcccttatttctttcttttcctcccgtagctccctctg 17353716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 469 - 515
Target Start/End: Original strand, 31712532 - 31712578
Alignment:
Q  469 gcataacacttccctcattctttcttttcctcccgtagctctctctg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31712532 gcataacacttccctcattctttcttttcctcccgtagctctctctg 31712578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 469 - 515
Target Start/End: Complemental strand, 39156579 - 39156533
Alignment:
Q  469 gcataacacttccctcattctttcttttcctcccgtagctctctctg 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39156579 gcataacacttccctcattctttcttttcctcccgtagctctctctg 39156533  T

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