View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17931_low_4 (Length: 251)

Name: NF17931_low_4
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17931_low_4
NF17931_low_4
[»] chr1 (7 HSPs)
chr1 (1-238)||(34668598-34668835)
chr1 (96-220)||(17420079-17420207)
chr1 (127-193)||(1662481-1662546)
chr1 (128-192)||(4276735-4276799)
chr1 (22-78)||(24460313-24460369)
chr1 (127-185)||(16982034-16982091)
chr1 (127-183)||(870962-871017)
[»] chr7 (6 HSPs)
chr7 (127-213)||(1431406-1431491)
chr7 (100-160)||(33894562-33894622)
chr7 (98-212)||(24975792-24975906)
chr7 (96-192)||(49060448-49060544)
chr7 (22-54)||(259710-259742)
chr7 (103-170)||(46223146-46223212)
[»] chr2 (6 HSPs)
chr2 (99-191)||(25790037-25790127)
chr2 (22-76)||(1830143-1830197)
chr2 (123-199)||(43431538-43431613)
chr2 (96-160)||(31740025-31740091)
chr2 (96-188)||(29430668-29430759)
chr2 (96-175)||(35329885-35329964)
[»] chr5 (11 HSPs)
chr5 (127-214)||(26516180-26516270)
chr5 (96-189)||(35135728-35135821)
chr5 (27-78)||(14706201-14706252)
chr5 (127-215)||(20982233-20982324)
chr5 (102-160)||(37063146-37063205)
chr5 (20-74)||(4619813-4619867)
chr5 (28-78)||(10771806-10771856)
chr5 (196-226)||(11095624-11095654)
chr5 (28-78)||(19177547-19177597)
chr5 (96-175)||(19177404-19177483)
chr5 (25-73)||(42034167-42034215)
[»] scaffold0590 (1 HSPs)
scaffold0590 (96-192)||(1140-1236)
[»] scaffold0275 (1 HSPs)
scaffold0275 (96-192)||(2739-2835)
[»] chr4 (6 HSPs)
chr4 (96-160)||(21593078-21593142)
chr4 (16-65)||(25571374-25571423)
chr4 (25-77)||(19394864-19394916)
chr4 (22-78)||(52333700-52333756)
chr4 (96-160)||(53155204-53155267)
chr4 (96-175)||(54325103-54325182)
[»] chr3 (6 HSPs)
chr3 (25-78)||(22667505-22667558)
chr3 (25-78)||(22724144-22724197)
chr3 (130-175)||(25183089-25183134)
chr3 (25-78)||(26990769-26990822)
chr3 (127-192)||(45433037-45433102)
chr3 (23-75)||(31337325-31337377)
[»] chr8 (5 HSPs)
chr8 (31-78)||(2487929-2487976)
chr8 (127-192)||(14482110-14482174)
chr8 (127-175)||(5226527-5226574)
chr8 (127-191)||(39392759-39392822)
chr8 (22-50)||(43717846-43717874)
[»] chr6 (5 HSPs)
chr6 (96-173)||(6310290-6310368)
chr6 (102-199)||(7354105-7354202)
chr6 (31-72)||(4308885-4308926)
chr6 (96-192)||(10452426-10452522)
chr6 (127-199)||(8349762-8349833)
[»] scaffold0091 (1 HSPs)
scaffold0091 (127-175)||(5944-5991)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34668835 - 34668598
Alignment:
Q  1 cttcaatattgtaaatagttatagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgagctgttggtaagagcttattata 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||    
T  34668835 cttcaatattgtaaagaattatagggcctatttggattggcttatttgagtttatgtactgacatgagcacttgtgagctgtttggaagagcttattata 34668736  T
Q  101 gcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctcttaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  34668735 gcttatatgaaagtagttcaacttactttatctttcgttatagaaatagtctacacatagaacacttacatgataagcgcttatactataagctcttaag 34668636  T
Q  201 ttgtttatccaaacatggcttaatctaaattacagaat 238  Q
    |||||||||| ||||||||||||||| ||||| |||||    
T  34668635 ttgtttatccgaacatggcttaatctgaattatagaat 34668598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 17420207 - 17420079
Alignment:
Q  96 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagct 194  Q
    ||||||||||||||||| | ||||||| ||| |||||||||  ||||  ||||||||||||||| ||  |||||| || || ||||||||||||||| |     
T  17420207 ttatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacat-aagtacttatgtgctaagcgcttatactataatca 17420109  T
Q  195 c----ttaagttgtttatccaaacatggct 220  Q
    |    ||||| |||||||||||||||||||    
T  17420108 cttaattaagctgtttatccaaacatggct 17420079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 1662546 - 1662481
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagc 193  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||||||| |  ||||||||| ||||    
T  1662546 tttatctttcgttatagaagtagtttatacat-aaacacttatatgatatgtacttatactacaagc 1662481  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 4276735 - 4276799
Alignment:
Q  128 ttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    |||||||| ||||| |||||||||||||| ||||||| |||||||||| | | |||| |||||||    
T  4276735 ttatcttttgttatagaaatagtttatacttaaaacatttatatgataagtgattatgctataag 4276799  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 24460313 - 24460369
Alignment:
Q  22 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    |||||||| ||||||||| |||||||||  |||  ||||||||||||||||||||||    
T  24460313 tagggcctgtttggattgacttatttgaacttatctactgacatgagcacttgtgag 24460369  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 16982034 - 16982091
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttata 185  Q
    ||||||||| ||||||||||||  |||||||| |||||||||||||||| || ||||||    
T  16982034 tttatcttttgttatcgaaataagttatacat-aaacacttatatgataagctcttata 16982091  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 871017 - 870962
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgctta 183  Q
    ||||||||| |||||  ||||||||||||||| || ||||||||||||| |||||||    
T  871017 tttatcttttgttataaaaatagtttatacat-aagcacttatatgataagcgctta 870962  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 1431406 - 1431491
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctcttaagttgtttatccaaa 213  Q
    ||||| |||| |||| ||||||  ||||||||||| ||||||||||||| || ||||| |||||||  |||||||||||||||||||    
T  1431406 tttatttttcattatggaaataacttatacataaa-cacttatatgataagcacttatgctataagaacttaagttgtttatccaaa 1431491  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 33894622 - 33894562
Alignment:
Q  100 agcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataa 160  Q
    |||||||||||||  |||| |||||| ||||||||| ||||| ||||||| ||||||||||    
T  33894622 agcttatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatacataa 33894562  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 24975906 - 24975792
Alignment:
Q  98 atagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctct 196  Q
    ||||||||||| |||  |||||| ||| | ||||||||| ||||| ||| ||| |||||||| |  ||||||||||||| || | ||| ||| |||| ||    
T  24975906 atagcttatataaaaacagttcgcctttattttatcttttgttatagaagtagattatacatcag-cacttatatgataagcacatatgctacaagcgct 24975808  T
Q  197 taagttgtttatccaa 212  Q
    ||||||||||||||||    
T  24975807 taagttgtttatccaa 24975792  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 49060544 - 49060448
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    ||||||||||||| ||| || || ||||| | ||||| ||| ||||| ||||||| |||||||| ||| |||||||||||| ||  ||||||||||||    
T  49060544 ttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacat-aaatacttatatgataagccattatactataag 49060448  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 259710 - 259742
Alignment:
Q  22 tagggcctatttggattggcttatttgagttta 54  Q
    ||||||||| |||||||||||||||||||||||    
T  259710 tagggcctacttggattggcttatttgagttta 259742  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 46223146 - 46223212
Alignment:
Q  103 ttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttata 170  Q
    |||||||||| ||||||||||| | ||||||||| ||||| ||||||| |||||||| |||||||||||    
T  46223146 ttatatgaaa-tagttcgactttaatttatcttttgttatggaaatagcttatacat-aaacacttata 46223212  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 25790127 - 25790037
Alignment:
Q  99 tagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataa 191  Q
    ||||||||||||||  |||| ||||| |||||||||||  |||| ||||||  |||||||||||   ||||||||||| |||||||||||||||    
T  25790127 tagcttatatgaaaacagtttgacttcactttatctttttttatagaaatatattatacataaa---cttatatgataagcgcttatactataa 25790037  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 1830197 - 1830143
Alignment:
Q  22 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtg 76  Q
    |||||||| ||||||||| ||||||||||||||  ||||||||| ||||||||||    
T  1830197 tagggcctgtttggattgacttatttgagtttatttactgacataagcacttgtg 1830143  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 43431538 - 43431613
Alignment:
Q  123 ttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctcttaa 199  Q
    ||||||||||||| ||||| ||||||  |||||||| || ||||||||||||| |||| ||| |||||||| |||||    
T  43431538 ttactttatcttttgttattgaaataacttatacattaa-cacttatatgataagcgcctatcctataagcgcttaa 43431613  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 31740025 - 31740091
Alignment:
Q  96 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatag-tttatacataa 160  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  31740025 ttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagctttatacataa 31740091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 29430759 - 29430668
Alignment:
Q  96 ttatagcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatacta 188  Q
    |||||||||||| ||||  |||| |||||  |||| |||| ||||| ||||||| |||||||| |||| ||| |||||||  |||||||||||    
T  29430759 ttatagcttataagaaaacagtttgactttatttaacttttgttatagaaatagcttatacat-aaacccttgtatgataaacgcttatacta 29430668  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 35329885 - 35329964
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    ||||||||||| |||||| || | ||||| | ||||||||  ||||| |||||||||||| ||| ||||||||||||||||    
T  35329885 ttatagcttatgtgaaagcagcttgactttattttatcttatgttatggaaatagtttatgcat-aaacacttatatgata 35329964  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 26516270 - 26516180
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctc----ttaagttgtttatccaaac 214  Q
    ||||||||| ||| | ||||||| ||||||||||  ||||||||||||| |||||||| |||||||| |    |||||||||||||||||||    
T  26516270 tttatcttttgttttagaaatagcttatacataag-cacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 35135728 - 35135821
Alignment:
Q  96 ttatagcttatatgaaagtagttcgac-ttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactat 189  Q
    ||||||||||||||||| ||||| ||| ||| ||||||||| ||||| ||||||  |||||||| ||||||||||||| || || ||||| ||||    
T  35135728 ttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacat-aaacacttatatgttaagcacttatgctat 35135821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 14706201 - 14706252
Alignment:
Q  27 cctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    ||||||||||||| |||||||||| |||| ||||||||| | ||||||||||    
T  14706201 cctatttggattgacttatttgagcttacctactgacataaacacttgtgag 14706252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 20982233 - 20982324
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctctt----aagttgtttatccaaaca 215  Q
    |||||| || ||||| ||||||| ||||||||||  ||||||||||||| || ||||| |||||||| |||    ||||||||||||||||||    
T  20982233 tttatcctttgttatagaaatagcttatacataag-cacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaaca 20982324  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 37063146 - 37063205
Alignment:
Q  102 cttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataa 160  Q
    ||||||||||| ||||| ||||| | ||||||||| ||||| ||||||||||||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 4619867 - 4619813
Alignment:
Q  20 tatagggcctatttggattggcttatttgagtttacgtactgacatgagcacttg 74  Q
    |||||||||| |||||||||||||||||| |||||  | ||||||| ||||||||    
T  4619867 tatagggcctctttggattggcttatttgtgtttatttgctgacataagcacttg 4619813  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 10771806 - 10771856
Alignment:
Q  28 ctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    ||||||||||||||||||||||| |||  ||||| ||| ||||||||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgag 10771856  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 11095624 - 11095654
Alignment:
Q  196 ttaagttgtttatccaaacatggcttaatct 226  Q
    |||||||||||||||||||||||||||||||    
T  11095624 ttaagttgtttatccaaacatggcttaatct 11095654  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 19177597 - 19177547
Alignment:
Q  28 ctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    |||||||||||| ||||||||||||||| || || ||||| ||||||||||    
T  19177597 ctatttggattgacttatttgagtttacctattggcatgaacacttgtgag 19177547  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 19177483 - 19177404
Alignment:
Q  96 ttatagcttatatgaaagtagttcgacttacttt-atctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    |||||||||||||||||  |||| |||||| ||| |||||  ||| | |||||||||||||||| || |||||||||||||    
T  19177483 ttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacat-aagcacttatatgata 19177404  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 42034215 - 42034167
Alignment:
Q  25 ggcctatttggattggcttatttgagtttacgtactgacatgagcactt 73  Q
    ||||| |||||||| ||||||||||| |||| ||||||||| |||||||    
T  42034215 ggcctgtttggattagcttatttgagcttacctactgacataagcactt 42034167  T

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Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 1140 - 1236
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    |||| |||||||||| | ||||| ||||| | ||||||||| ||||| ||||||| ||||||||||  |||||||||||||| || |||| |||||||    
T  1140 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataag-cacttatatgatagacgtttatgctataag 1236  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 2835 - 2739
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    |||| |||||||||| | ||||| ||||| | ||||||||| ||||| ||||||| ||||||||||  |||||||||||||| || |||| |||||||    
T  2835 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataag-cacttatatgatagacgtttatgctataag 2739  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 21593078 - 21593142
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataa 160  Q
    ||||||||||||||||| ||||| ||||| | ||||||||| ||||| ||||||||||||||||||    
T  21593078 ttatagcttatatgaaaatagtt-gactttattttatctttagttatagaaatagtttatacataa 21593142  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 25571423 - 25571374
Alignment:
Q  16 tagttatagggcctatttggattggcttatttgagtttacgtactgacat 65  Q
    ||||| |||||||| ||||||||||||||||||||||||  |||||||||    
T  25571423 tagttttagggcctgtttggattggcttatttgagtttatctactgacat 25571374  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 19394864 - 19394916
Alignment:
Q  25 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtga 77  Q
    |||||||||||||||||||||||||| |||  || ||||||| ||| ||||||    
T  19394864 ggcctatttggattggcttatttgagcttatctattgacatgggcatttgtga 19394916  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 52333756 - 52333700
Alignment:
Q  22 tagggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    |||||||| ||| |||||||||||||||| |||  ||||||| | ||||||||||||    
T  52333756 tagggcctgtttcgattggcttatttgagcttatttactgacctaagcacttgtgag 52333700  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 53155267 - 53155204
Alignment:
Q  96 ttatagcttatatgaaagtagttcgacttactttatctttcgttatcgaaatagtttatacataa 160  Q
    ||||||| ||||||||| |||||||||||  ||||||||| |||||  |||||| ||||||||||    
T  53155267 ttatagcatatatgaaaatagttcgactttatttatcttttgttat-aaaatagcttatacataa 53155204  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 54325103 - 54325182
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    |||||||||||||||||  |||| ||||| | ||||||||| || || |||||||||||||||  || |||||||||||||    
T  54325103 ttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttataca-caagcacttatatgata 54325182  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 22667558 - 22667505
Alignment:
Q  25 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    ||||||||| |||||||||||||||| |||  ||||||||| ||||||||||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgag 22667505  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 22724197 - 22724144
Alignment:
Q  25 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    ||||||||| |||||||||||||||| |||  ||||||||| ||||||||||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgag 22724144  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 25183089 - 25183134
Alignment:
Q  130 atctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    |||||| |||||  ||||||||||||||| ||||||||||||||||    
T  25183089 atcttttgttataaaaatagtttatacattaaacacttatatgata 25183134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 26990822 - 26990769
Alignment:
Q  25 ggcctatttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    ||||| ||||||||||||||||||||||| |  ||||| || ||||||||||||    
T  26990822 ggcctgtttggattggcttatttgagtttgccaactgatataagcacttgtgag 26990769  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 45433037 - 45433102
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    |||||||||  |||| ||||||||| || | ||||||||||||||||||  |||||| ||||||||    
T  45433037 tttatcttttcttatagaaatagttcattcttaaaacacttatatgataaacgcttacactataag 45433102  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 31337325 - 31337377
Alignment:
Q  23 agggcctatttggattggcttatttgagtttacgtactgacatgagcacttgt 75  Q
    |||| ||||||||||||| || ||||||||||  ||||||||| |||||||||    
T  31337325 agggtctatttggattggtttgtttgagtttatctactgacataagcacttgt 31337377  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 2487929 - 2487976
Alignment:
Q  31 tttggattggcttatttgagtttacgtactgacatgagcacttgtgag 78  Q
    |||||||||||||||||||||| |  ||||||||| ||||||||||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgag 2487976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 14482174 - 14482110
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    ||||||||| ||||| |||||||||||||||| || ||||||||||||| || || || |||||||    
T  14482174 tttatcttttgttatagaaatagtttatacat-aagcacttatatgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5226574 - 5226527
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    ||||||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  5226574 tttatcttttgttattgaaattgtttatacat-aaacacttatatgata 5226527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 39392759 - 39392822
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataa 191  Q
    ||||||||| ||||| |||||||||||||||| |  ||||||||||||| || ||||| ||||||    
T  39392759 tttatcttttgttatagaaatagtttatacat-agccacttatatgataagcacttatgctataa 39392822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 43717846 - 43717874
Alignment:
Q  22 tagggcctatttggattggcttatttgag 50  Q
    |||||||||||||||||||||||||||||    
T  43717846 tagggcctatttggattggcttatttgag 43717874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 6310290 - 6310368
Alignment:
Q  96 ttatagcttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatga 173  Q
    |||||||||||||||||  | || ||||| |||| |||||| ||||| ||||| | ||||||||||| |||||||||||    
T  6310290 ttatagcttatatgaaaacaattagactttacttcatcttttgttatagaaattgattatacataaagcacttatatga 6310368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 7354202 - 7354105
Alignment:
Q  102 cttatatgaaagtagttcgactt-actttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctcttaa 199  Q
    ||||||||||| |||||||| || | ||||||||| ||||| |||||||||||||||| ||| |||| ||||| | ||  |||| |||||||| |||||    
T  7354202 cttatatgaaaatagttcgattttattttatcttttgttatagaaatagtttatacatgaaa-acttgtatgaaaagcatttatgctataagcgcttaa 7354105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 4308926 - 4308885
Alignment:
Q  31 tttggattggcttatttgagtttacgtactgacatgagcact 72  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataagcact 4308885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 10452426 - 10452522
Alignment:
Q  96 ttatagcttatatgaaagtagttcga-cttactttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataag 192  Q
    ||||||||||||||||| ||||| ||  ||| ||||| ||| ||||| ||||||| |||||||| || |||| ||||||||| | ||||| |||||||    
T  10452426 ttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacat-aagcactgatatgatagccacttatgctataag 10452522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 8349762 - 8349833
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgataggcgcttatactataagctcttaa 199  Q
    ||||||||| ||||  ||||||||||||||| ||| ||||||||||||| | | |||| |||||||| |||||    
T  8349762 tttatcttttgttagagaaatagtttatacacaaa-cacttatatgataagtggttatgctataagcgcttaa 8349833  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 5991 - 5944
Alignment:
Q  127 tttatctttcgttatcgaaatagtttatacataaaacacttatatgata 175  Q
    ||||||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  5991 tttatcttttgttattgaaattgtttatacat-aaacacttatatgata 5944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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