View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17931_low_5 (Length: 227)
Name: NF17931_low_5
Description: NF17931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17931_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 27354581 - 27354712
Alignment:
| Q |
38 |
cagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcataacgggtaatctcatccccaaagtcagctgtaaag |
137 |
Q |
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| T |
27354581 |
cagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcatagcgggtaatctcatccccaaagtcagctgtaaag |
27354680 |
T |
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| Q |
138 |
aggttagataacctcacaacaccctacagaaa |
169 |
Q |
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| T |
27354681 |
aggttaggtaacctcacaacaccctacagaaa |
27354712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 42995814 - 42995945
Alignment:
| Q |
38 |
cagcaccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaataaagtggcataacgggtaatctcatccccaaagtcagctgtaaag |
137 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
42995814 |
cagcaccgtttactctctcaactaagacttcaaactagttgtcttttgtatcaataaagtggcatagcgggaaatctcatccccaaagtcagttgtaaag |
42995913 |
T |
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| Q |
138 |
aggttagataacctcacaacaccctacagaaa |
169 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
42995914 |
aggttaggtaacctcacaacaccctacagaaa |
42995945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 21005484 - 21005609
Alignment:
| Q |
41 |
caccgtttactctctcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagag |
139 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||| || || || |||||| | ||| |||||||||||||||||||| | | ||| || |
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| T |
21005484 |
caccatttactctctcaactaagacttcaaactggttttcttttgtgtctatcaaggtggcaaagcggctaatctcatccccaaagtcaacagaaaatag |
21005583 |
T |
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| Q |
140 |
gttagataacctcacaacaccctaca |
165 |
Q |
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| T |
21005584 |
gttaggcaacctaacagcgccctaca |
21005609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 16981890 - 16981781
Alignment:
| Q |
55 |
tcaactaagacttcaaactggttgtcttttgtttcaat-aaagtggcataacgggtaatctcatccccaaagtcagctgtaaagaggttagataacctca |
153 |
Q |
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||||| |||| |||||||||||| |||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||| ||||||||| | ||| |||| |
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| T |
16981890 |
tcaaccaagatttcaaactggttctcttttgtatcaatcaaagtggcatatcaggtgatctcatctccaaagtcagctccaaagaggtttggtaatctca |
16981791 |
T |
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| Q |
154 |
caacacccta |
163 |
Q |
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|||||||||| |
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| T |
16981790 |
caacacccta |
16981781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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