View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_high_10 (Length: 391)
Name: NF17932_high_10
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 5621723 - 5622088
Alignment:
| Q |
10 |
ggtagattatactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactt |
109 |
Q |
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| T |
5621723 |
ggtaaattgtactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactt |
5621822 |
T |
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| Q |
110 |
tgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccatta |
209 |
Q |
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| T |
5621823 |
tgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccatta |
5621922 |
T |
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| Q |
210 |
agttgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621923 |
agttgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatca |
5622022 |
T |
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| Q |
310 |
gtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatga |
375 |
Q |
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| T |
5622023 |
gtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatga |
5622088 |
T |
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