View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_high_13 (Length: 364)
Name: NF17932_high_13
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 7719986 - 7719717
Alignment:
| Q |
3 |
catgtataattaaaagtttgagattttaatttctagtaaaagctaggtgataattaagagagaacacctatagtagtataagttttatttgatcatttta |
102 |
Q |
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| T |
7719986 |
catgtataattaaaagtttgagattttaatttctagtaaaagctaggtgataattaagagagaacacctatagtagtataagttttatttgatcatttta |
7719887 |
T |
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| Q |
103 |
attatacatatggatttttagaaattatcttttagttaatgttttcattaaagaatatgacnnnnnnngtaggtagttatacactttttaccttcatata |
202 |
Q |
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| T |
7719886 |
attatacatatggatttttagaaattatcttttagttaatgttttcattaaagaatatgac-aaaaaggtagttagttatacacttttcaccttcatata |
7719788 |
T |
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| Q |
203 |
tctattcaggaccgtttcagaaattttggtaaacaatacccgaacttataatttggactctaattaataaa |
273 |
Q |
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| T |
7719787 |
tctattcaggaccgtttcaaaaattttggtgatctatgaccgaacttataatttggactctaattaataaa |
7719717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 38141971 - 38141901
Alignment:
| Q |
275 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacct |
345 |
Q |
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| T |
38141971 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggacccttac-tttttaccggtcataacct |
38141901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 17486089 - 17486159
Alignment:
| Q |
275 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacct |
345 |
Q |
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| T |
17486089 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggatccttac-tttttaccggtcataacct |
17486159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 17567125 - 17567055
Alignment:
| Q |
275 |
gggtgcccctaatatg-accttcctaaaagtggttcatccatggacctttacttttttaccggtcataacct |
345 |
Q |
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| T |
17567125 |
gggtgcccctaatatggaccttcctaaaagtggttcatccatggatccttac-tttttaccggtcataacct |
17567055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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