View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17932_high_18 (Length: 259)

Name: NF17932_high_18
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17932_high_18
NF17932_high_18
[»] chr8 (9 HSPs)
chr8 (145-230)||(44251284-44251368)
chr8 (146-238)||(3234656-3234747)
chr8 (13-95)||(7129531-7129615)
chr8 (21-93)||(30927928-30928002)
chr8 (16-64)||(5924842-5924889)
chr8 (21-93)||(1065417-1065491)
chr8 (21-93)||(41273515-41273589)
chr8 (21-93)||(41293718-41293792)
chr8 (202-238)||(3813253-3813289)
[»] chr4 (18 HSPs)
chr4 (178-239)||(40184339-40184400)
chr4 (13-93)||(13267467-13267549)
chr4 (13-94)||(19720630-19720713)
chr4 (13-95)||(39010126-39010210)
chr4 (13-64)||(40721953-40722003)
chr4 (21-98)||(51377290-51377369)
chr4 (13-93)||(3222989-3223071)
chr4 (178-231)||(20281434-20281487)
chr4 (21-93)||(27001406-27001480)
chr4 (21-93)||(34259815-34259889)
chr4 (43-99)||(42178068-42178127)
chr4 (13-93)||(44368191-44368273)
chr4 (21-93)||(53662425-53662499)
chr4 (21-93)||(55267998-55268072)
chr4 (30-93)||(5208333-5208398)
chr4 (28-95)||(8680939-8681008)
chr4 (43-95)||(13389470-13389525)
chr4 (30-93)||(24235320-24235385)
[»] chr1 (20 HSPs)
chr1 (175-240)||(36632941-36633006)
chr1 (169-240)||(51043032-51043103)
chr1 (144-238)||(16299831-16299924)
chr1 (169-232)||(36632866-36632929)
chr1 (13-93)||(11097873-11097955)
chr1 (169-238)||(17064061-17064130)
chr1 (146-238)||(9026214-9026304)
chr1 (146-229)||(7015910-7015992)
chr1 (21-95)||(25995458-25995534)
chr1 (191-238)||(41463920-41463967)
chr1 (21-94)||(13813557-13813632)
chr1 (13-95)||(48871944-48872027)
chr1 (13-70)||(7078489-7078545)
chr1 (144-237)||(10556259-10556350)
chr1 (13-70)||(26547260-26547316)
chr1 (21-93)||(42256460-42256534)
chr1 (13-93)||(51193120-51193202)
chr1 (144-240)||(17063247-17063342)
chr1 (178-238)||(28033932-28033992)
chr1 (19-94)||(49699747-49699824)
[»] chr3 (16 HSPs)
chr3 (144-238)||(4549490-4549583)
chr3 (145-230)||(23308596-23308680)
chr3 (21-94)||(11327107-11327182)
chr3 (13-93)||(8254027-8254109)
chr3 (21-93)||(32931915-32931989)
chr3 (24-95)||(2482674-2482747)
chr3 (48-94)||(43441671-43441720)
chr3 (27-93)||(53932394-53932462)
chr3 (178-240)||(860856-860918)
chr3 (24-93)||(27162469-27162540)
chr3 (21-94)||(50879594-50879669)
chr3 (21-93)||(20714243-20714317)
chr3 (21-93)||(36818956-36819030)
chr3 (30-93)||(108431-108496)
chr3 (42-93)||(5398918-5398972)
chr3 (144-240)||(18365771-18365866)
[»] chr2 (18 HSPs)
chr2 (13-93)||(36909832-36909914)
chr2 (13-93)||(44484645-44484727)
chr2 (169-238)||(18318328-18318397)
chr2 (21-93)||(34144548-34144622)
chr2 (13-93)||(35171215-35171297)
chr2 (13-93)||(3196076-3196158)
chr2 (13-70)||(36383488-36383544)
chr2 (30-93)||(36435681-36435746)
chr2 (190-238)||(43305270-43305318)
chr2 (18-70)||(44085300-44085351)
chr2 (30-95)||(37257447-37257516)
chr2 (13-93)||(10687941-10688023)
chr2 (21-93)||(15283247-15283321)
chr2 (21-93)||(27307228-27307302)
chr2 (21-91)||(29611924-29611993)
chr2 (28-107)||(9695065-9695146)
chr2 (42-93)||(20534068-20534122)
chr2 (146-238)||(38623655-38623745)
[»] chr5 (13 HSPs)
chr5 (13-94)||(30574366-30574449)
chr5 (13-93)||(14914372-14914454)
chr5 (145-232)||(1422660-1422746)
chr5 (26-95)||(9599730-9599801)
chr5 (13-94)||(22920481-22920564)
chr5 (21-93)||(9594478-9594552)
chr5 (169-238)||(19264704-19264773)
chr5 (13-70)||(28501643-28501699)
chr5 (28-95)||(39788710-39788779)
chr5 (21-93)||(32634708-32634782)
chr5 (30-93)||(3634494-3634559)
chr5 (21-92)||(31025002-31025075)
chr5 (24-68)||(32379929-32379972)
[»] chr6 (11 HSPs)
chr6 (13-70)||(12501500-12501556)
chr6 (13-94)||(12500016-12500099)
chr6 (13-94)||(12507345-12507428)
chr6 (13-94)||(12508802-12508885)
chr6 (144-232)||(31636873-31636960)
chr6 (28-93)||(3339503-3339570)
chr6 (30-95)||(25995440-25995507)
chr6 (21-93)||(2056783-2056857)
chr6 (191-240)||(5583596-5583645)
chr6 (24-65)||(21210290-21210330)
chr6 (30-93)||(17417241-17417306)
[»] chr7 (9 HSPs)
chr7 (21-94)||(33050182-33050257)
chr7 (21-93)||(13437198-13437272)
chr7 (13-93)||(37149478-37149561)
chr7 (13-70)||(8326151-8326207)
chr7 (21-93)||(30864414-30864488)
chr7 (21-93)||(43079629-43079703)
chr7 (21-93)||(44511139-44511213)
chr7 (27-94)||(2347062-2347131)
chr7 (45-94)||(42118715-42118766)
[»] scaffold0026 (1 HSPs)
scaffold0026 (30-94)||(113624-113690)
[»] scaffold0011 (1 HSPs)
scaffold0011 (21-101)||(18587-18669)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-93)||(249134-249213)
[»] scaffold0085 (1 HSPs)
scaffold0085 (21-90)||(31297-31366)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 44251368 - 44251284
Alignment:
Q  145 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatatta 230  Q
    ||||||||||| |||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||| || ||||||    
T  44251368 ggttaaggaagccaaaagagaaa-attttaagccaaaagaggaaacatttaatgcattgattacacaactttgaatacaaatatta 44251284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 3234656 - 3234747
Alignment:
Q  146 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||||||||||||||| || | ||||| ||||| || |||   |||||| || ||||||||||| |||||||||| ||||||||||||||    
T  3234656 gttaaggaagtcaaaagaggaa-actttaagccaaatgaagaagcctttaattcattgattacacaattttgaatgcaaatattacccttttt 3234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 7129615 - 7129531
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 95  Q
    |||| |||||||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| ||||||| |||| ||||    
T  7129615 gagaggaaaagaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatattatttatcaa 7129531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 30927928 - 30928002
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| |||||| |||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  30927928 aagaccatcatatgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 30928002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 5924889 - 5924842
Alignment:
Q  16 atgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaatt 64  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  5924889 atgaaaagaacatcatgtgagt-atgagagagaaagttgtacaaaaatt 5924842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 1065491 - 1065417
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  1065491 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 1065417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 41273589 - 41273515
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  41273589 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgtttgtacaaatatcatttctc 41273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 41293718 - 41293792
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   |||||||  ||||||||||||||    
T  41293718 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtaaaaatatcatttctc 41293792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 3813289 - 3813253
Alignment:
Q  202 tgattacacaactttgaatgcatatattacccttttt 238  Q
    |||||||||||||||||||||| |||||||| |||||    
T  3813289 tgattacacaactttgaatgcaaatattaccattttt 3813253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 40184339 - 40184400
Alignment:
Q  178 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttta 239  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  40184339 caaaagaagaaatatttaatgcaatgattacacaactttgaatacatatattatccttttta 40184400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 13267467 - 13267549
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    |||| |||||||| |||||||||||| |||||||||||||| | ||||| |||||||   |||||||| |||||||||||||||    
T  13267467 gagaggaaaagaaaatcatgtgagta-tgtgagagaaagttttccaaaatttgtcacaaaatggttgtacaaatatcatttctc 13267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 19720630 - 19720713
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| |||||||| || |||||||||| | ||||||||||| ||||||| ||||||||   ||| ||||||||||||||||||||    
T  19720630 gagaggaaaagaatattatgtgagtaa-gagagagaaagttattcaaaagttgtcacaaaatggatgtgcaaatatcatttctca 19720713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 39010126 - 39010210
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 95  Q
    ||||||| ||||||||||| |||||| || ||||||||| |||  |||| ||||||||   ||||||| |||||||||||||||||    
T  39010126 gagatgataagaacatcatttgagta-tgagagagaaagctgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctcaa 39010210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 40721953 - 40722003
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaatt 64  Q
    |||| |||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  40721953 gagaggaaaagaacatcatgtgagt-atgagagagaaagttgtccaaaaatt 40722003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 51377290 - 51377369
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaa 98  Q
    |||| ||||||||||||| || ||||||||||||  ||||| ||||||||   ||||||| ||||||||||||||| ||||    
T  51377290 aagaccatcatgtgagta-tgagagagaaagttggacaaaagttgtcacaaattggttgtacaaatatcatttctctacaa 51377369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 3223071 - 3222989
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||||   ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3223071 gagatgaaaaagccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 20281434 - 20281487
Alignment:
Q  178 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattac 231  Q
    ||||||| |||| |||||||||| ||||||||||| ||| |||||| |||||||    
T  20281434 caaaagatgaaacatttaatgcattgattacacaattttaaatgcaaatattac 20281487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 27001406 - 27001480
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  27001406 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 27001480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 34259889 - 34259815
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||| || ||||||||| || ||||||||||||||||| | ||||||||   ||||||| |||||||||||||||    
T  34259889 aagaagataatgtgagta-tgagagagaaagttgttcaacagttgtcacaaaatggttgtacaaatatcatttctc 34259815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 42178068 - 42178127
Alignment:
Q  43 gagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaa 99  Q
    |||||||| || |||||||||||||||||   | |||| |||||||||||||||||||||    
T  42178068 gagagaaaattattcaaaaattgtcacataatgattgtacaaatatcatttctcaacaaa 42178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 44368191 - 44368273
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||| |||| ||||||||||||| |  ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  44368191 gagatgataagaccatcatgtgagta-taagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 44368273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 53662425 - 53662499
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||||||||||| || || ||||||||||||| |||||||||| ||   || ||||| |||||||||||||||    
T  53662425 aagaacatcatgtgaata-tgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctc 53662499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 55267998 - 55268072
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || |||| |||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  55267998 aagatcatcatgtgagta-tgagagataaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 55268072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 5208333 - 5208398
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  5208333 atgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 5208398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 8681008 - 8680939
Alignment:
Q  28 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 95  Q
    ||||||||||| || ||||||||||||| |||||| | ||||||   |||||| |||||||||||||||||    
T  8681008 tcatgtgagta-tgagagagaaagttgtccaaaaaatatcacataatggttgtacaaatatcatttctcaa 8680939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 13389470 - 13389525
Alignment:
Q  43 gagagaaagttgtt-caaaaattgtcac--atggttgtgcaaatatcatttctcaa 95  Q
    |||||||||||||  |||||||||||||  |||||||| |||||||||||||||||    
T  13389470 gagagaaagttgtcgcaaaaattgtcaccaatggttgttcaaatatcatttctcaa 13389525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 24235385 - 24235320
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| || ||||||||||||| ||||||||||||||   || |||| |||||||||||||||    
T  24235385 atgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctc 24235320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 36633006 - 36632941
Alignment:
Q  175 aaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  36633006 aaccaaaagaggaagcatttaatgcattgattacacaactttgaatgcaaatattacccttattag 36632941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 51043103 - 51043032
Alignment:
Q  169 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    |||||||  ||||||||||| ||||||||||| |||||||||||||||||||  | ||||||||||||||||    
T  51043103 attttaagtcaaaagaggaagtatttaatgcattgattacacaactttgaatataaatattaccctttttag 51043032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 16299831 - 16299924
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||||||||  ||| ||| || ||||||| |||||| || || |||||||| || ||||||||||| |||||||||| ||||||||||||||    
T  16299831 tggttaaggaagctaaacgaggaa-attttaagccaaaaaagaaagtatttaattcattgattacacaattttgaatgcagatattacccttttt 16299924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 36632866 - 36632929
Alignment:
Q  169 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 232  Q
    ||||||| | |||||| |||  |||||||||| |||||||||||||||||||||| ||||||||    
T  36632866 attttaagcaaaaagatgaatcatttaatgcattgattacacaactttgaatgcaaatattacc 36632929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 11097873 - 11097955
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    |||| |||||||| || ||||||||| || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||    
T  11097873 gagaggaaaagaatattatgtgagta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 17064061 - 17064130
Alignment:
Q  169 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||| ||||||||  |||||||||||||| |||||||  |||||| |||||| |||||| |||||||    
T  17064061 attttaagccaaaagaaaaaatatttaatgcattgattactaaactttaaatgcaaatattatccttttt 17064130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 9026214 - 9026304
Alignment:
Q  146 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||| ||||||||||||| || ||||||| |||||||| |||  |||||||||| ||||||||||| ||| |||| | |||||||| |||||    
T  9026214 gttaatgaagtcaaaagagaaa-attttaagccaaaagatgaagcatttaatgcattgattacacaa-tttaaatgtaaatattacctttttt 9026304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 7015910 - 7015992
Alignment:
Q  146 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatatt 229  Q
    |||||||||| |||||||| ||  ||||||  | |||||||||  |||||||||| ||||||||||| |||||||||| |||||    
T  7015910 gttaaggaagccaaaagaggaag-ttttaagtctaaagaggaagcatttaatgcattgattacacaattttgaatgcaaatatt 7015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 25995534 - 25995458
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 95  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||||    
T  25995534 aagaccatcatgtgagta-tgagagagaaagttgtacaaaacttgtcacaaattgattgtacaaatatcatttctcaa 25995458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 41463920 - 41463967
Alignment:
Q  191 atttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    |||||||||| |||||||| ||||||||||||| |||||| |||||||    
T  41463920 atttaatgcattgattacataactttgaatgcaaatattatccttttt 41463967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 13813632 - 13813557
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| ||||||||||||||||    
T  13813632 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctca 13813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 48871944 - 48872027
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaa-ttgtcac--atggttgtgcaaatatcatttctcaa 95  Q
    |||| |||||||||||||||||||| ||| | ||||||||||| |||||| |||||||  || ||||| |||||||||||||||||    
T  48871944 gagaggaaaagaacatcatgtgagt-atgag-gagaaagttgtccaaaaagttgtcacgaatagttgtacaaatatcatttctcaa 48872027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 7078489 - 7078545
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    |||| |||||||| || ||||||||| || ||||||||||||||||||| ||||||||    
T  7078489 gagaagaaaagaatattatgtgagta-tgagagagaaagttgttcaaaagttgtcaca 7078545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 10556259 - 10556350
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttt 237  Q
    ||||||||||||||||||||  || |||||||  |||||||||||  |||||||| | || || || ||||||||||||| || ||||||||||    
T  10556259 tggttaaggaagtcaaaagaagaa-attttaagtcaaaagaggaagcatttaatgtattggttgcataactttgaatgcagat-ttaccctttt 10556350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 26547316 - 26547260
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    |||| |||||||| || |||||| || || ||||||||||||||||||||||||||||    
T  26547316 gagaagaaaagaatattatgtgaata-tgagagagaaagttgttcaaaaattgtcaca 26547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 42256534 - 42256460
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  42256534 aagaccatcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 51193120 - 51193202
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||| ||||||||||||| || ||||||||||||| |||||||||| | |   ||| ||| |||||||||||||||    
T  51193120 gagaggaaaagagcatcatgtgagta-tgagagagaaagttgtccaaaaattgttataaaatggatgtacaaatatcatttctc 51193202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 17063342 - 17063247
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    |||||||| |||||||||||| || |||||||  ||||||| |||  |||||||||| |||||  ||||||| ||||| | ||||||| ||| ||||    
T  17063342 tggttaagtaagtcaaaagaggaa-attttaagtcaaaagatgaagcatttaatgcattgattctacaacttcgaatgtaaatattactcttattag 17063247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 28033992 - 28033932
Alignment:
Q  178 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    |||||||||||  ||||||| || ||||||||||||||| |||||| ||||| | ||||||    
T  28033992 caaaagaggaagcatttaatacattgattacacaactttaaatgcaaatattgctcttttt 28033932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 49699747 - 49699824
Alignment:
Q  19 aaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||||||||||||||||||| |  || ||||||||||| ||||||| ||| |   ||||||| ||||||||||||||||    
T  49699747 aaaagaacatcatgtgagta-taagaaagaaagttgttaaaaaattatcataaaatggttgtacaaatatcatttctca 49699824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 4549490 - 4549583
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||||||||||||||||| || ||||||| | ||||||| || |||| |||||| | || ||||||||||||||||| |||||| |||||||    
T  4549490 tggttaaggaagtcaaaagagaaa-attttaagctaaaagagaaagtattcaatgcattaataacacaactttgaatgcaaatattaaccttttt 4549583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 23308680 - 23308596
Alignment:
Q  145 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatatta 230  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||    
T  23308680 ggttaaggaagttaaaagat-aatatttttagtcaaaagaggaagtatttaatgcattgattacacaattttgaatgtaaatatta 23308596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 11327182 - 11327107
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  11327182 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 11327107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 8254109 - 8254027
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  8254109 gagatgataagaccatcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 32931915 - 32931989
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  32931915 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 32931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 2482674 - 2482747
Alignment:
Q  24 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 95  Q
    |||||||||||| || || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||||    
T  2482674 aacatcatgtgatta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctcaa 2482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 43441720 - 43441671
Alignment:
Q  48 aaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 94  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  43441720 aaagttgttcaaaaattgtcacataatggttgtacaaatatcatttctca 43441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 53932394 - 53932462
Alignment:
Q  27 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    |||||||||||| || ||| ||||||||| |||||||||||||   |||||||| |||||||||||||||    
T  53932394 atcatgtgagta-tgagagtgaaagttgtccaaaaattgtcacaaaatggttgtacaaatatcatttctc 53932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 860856 - 860918
Alignment:
Q  178 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    |||||||| |||||||||||  | | |||||||||||||||||||| | |||||| |||||||    
T  860856 caaaagagaaaatatttaatatatttattacacaactttgaatgcaaacattaccatttttag 860918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 27162469 - 27162540
Alignment:
Q  24 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||||||||||| || ||||||||||||||||||| |||| ||   |||||||| ||||||||| |||||    
T  27162469 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgttacaaaatggttgtacaaatatcacttctc 27162540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 50879669 - 50879594
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   | ||||| ||||||||||||||||    
T  50879669 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaatttagttgtacaaatatcatttctca 50879594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 20714317 - 20714243
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  20714317 aagaccatcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 20714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 36819030 - 36818956
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||| ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  36819030 aagaccatgatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 108496 - 108431
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  108496 atgtgagta-tgagagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 5398972 - 5398918
Alignment:
Q  42 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  5398972 tgagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 5398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 18365771 - 18365866
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    |||||||||||| |||||||| || |||| ||  |||||||| ||   ||||||||| | |||||| ||||||||| | | ||||||||||||||||    
T  18365771 tggttaaggaagccaaaagaggaaaattt-aagtcaaaagagaaagcttttaatgcatttattacataactttgaaggtaaatattaccctttttag 18365866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 36909832 - 36909914
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    |||| |||||||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  36909832 gagaggaaaagaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 44484645 - 44484727
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||| ||   |||||||| |||||||||||||||    
T  44484645 gagatgataagaacatcatgtgagt-atgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctc 44484727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 18318328 - 18318397
Alignment:
Q  169 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||| ||||||||  ||  |||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  18318328 attttaagccaaaagataaagcatttaatgcattgattacacaactttgaatgcaaatattactcttttt 18318397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 34144548 - 34144622
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  34144548 aagaccatcatgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 34144622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 35171215 - 35171297
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| | |||||||||||   |||||||| |||||||||||||||    
T  35171215 gagatgataagaccatcatgtgagta-tgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctc 35171297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 3196076 - 3196158
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3196076 gagatgataagatcatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 36383544 - 36383488
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||    
T  36383544 gagatgataagaacatcatgtgagt-atgagagagaaagttgtacaaaagttgtcaca 36383488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 36435746 - 36435681
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| |||||||||||||||    
T  36435746 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 43305318 - 43305270
Alignment:
Q  190 tatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||||    
T  43305318 tatttaatgcattgattacacaactttaaatgcaaatattatccttttt 43305270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 44085351 - 44085300
Alignment:
Q  18 gaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    |||||||||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  44085351 gaaaagaacatcatgtgagt-atgtgatagaaaattgtccaaaaattgtcaca 44085300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 37257516 - 37257447
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgtt-caaaaattgtcac---atggttgtgcaaatatcatttctcaa 95  Q
    |||||||||||| |||||||||||||| ||||| |||||||   |||| ||| |||||||||||||||||    
T  37257516 atgtgagtaatgagagagaaagttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcaa 37257447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 10688023 - 10687941
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||| |||| |||||||||||| ||| |||||||||||||  |||| ||||||||   || |||| |||||||||||||||    
T  10688023 gagatgataagaccatcatgtgagt-atgagagagaaagttgtataaaagttgtcacaaattgtttgtacaaatatcatttctc 10687941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 15283247 - 15283321
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||| || ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  15283247 aagaatataatgtgagta-tgagagagaaagttgtctaaaaattgtcacaaagtggttgtacaaatatcatttctc 15283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 27307228 - 27307302
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  27307228 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 27307302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 29611924 - 29611993
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttc 91  Q
    ||||||||||||||||||   ||||||| ||||| ||||||||||||||   |||||| |||||||||||||||    
T  29611924 aagaacatcatgtgagta---tgagagagagttg-tcaaaaattgtcacaaaatggttatgcaaatatcatttc 29611993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 9695065 - 9695146
Alignment:
Q  28 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaagaattata 107  Q
    ||||||||||| || ||||||||||||| |||||||| || |||   |||||| ||||||||||||||||  ||| |||||||    
T  9695065 tcatgtgagta-tgagagagaaagttgtccaaaaattatctcataatggttgtacaaatatcatttctcattaaataattata 9695146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 20534068 - 20534122
Alignment:
Q  42 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| |||||||| |||| |||||   |||||||||||||||||||||||    
T  20534068 tgagagaaaattgttcaacaattatcacaaaatggttgtgcaaatatcatttctc 20534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 38623745 - 38623655
Alignment:
Q  146 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    ||||| |||| |||||||| || ||||||| |||||| || ||  ||||||| || ||||||||||||||| |||||| |||||| |||||||    
T  38623745 gttaaagaagccaaaagaggaa-attttaagccaaaa-agaaagcatttaattcattgattacacaactttaaatgcaaatattatccttttt 38623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 30574366 - 30574449
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    ||||||| |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  30574366 gagatgataagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctca 30574449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 14914454 - 14914372
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| |||||||||||||||||| || ||| |||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  14914454 gagaggaaaagaacatcatgtgaata-tgtaagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 1422746 - 1422660
Alignment:
Q  145 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 232  Q
    ||||||||||| |||||||| || ||||||| ||||||||| ||  ||| |||||| ||||||  |||||||||||||| ||||||||    
T  1422746 ggttaaggaagccaaaagag-aagattttaagccaaaagagtaagcattcaatgcattgattatccaactttgaatgcaaatattacc 1422660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 9599730 - 9599801
Alignment:
Q  26 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 95  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||||    
T  9599730 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcaa 9599801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 22920481 - 22920564
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 94  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||| ||||| |||| ||   |||||||| ||||||| ||||||||    
T  22920481 gagatgataagaacatcatgtgagt-atgagagagaaagttgtccaaaatttgttacaaaatggttgtacaaatattatttctca 22920564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 9594552 - 9594478
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  9594552 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 9594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 19264704 - 19264773
Alignment:
Q  169 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 238  Q
    |||||||  |||||||| |||||||||||||| ||||||  |||||||||||||| | |||||| |||||    
T  19264704 attttaaggcaaaagagaaaatatttaatgcattgattatccaactttgaatgcaaacattaccattttt 19264773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 28501699 - 28501643
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    ||||||| ||||||||||||||| || || ||||||||||||| ||||||||||||||    
T  28501699 gagatgataagaacatcatgtgaata-tgagagagaaagttgtacaaaaattgtcaca 28501643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 39788710 - 39788779
Alignment:
Q  28 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 95  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||   |||||| |||||||||||||||||    
T  39788710 tcatgtgagta-tgagagagaaagttgtccaaaagttgtcacataatggttgtacaaatatcatttctcaa 39788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 32634782 - 32634708
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  32634782 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacagattgattgtacaaatatcatttctc 32634708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 3634559 - 3634494
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||||||||||| |||||||    
T  3634559 atgtgagta-tgagagagaaagttgtaaaaaaattgtcacaaagtggttgtgcaaatataatttctc 3634494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 31025002 - 31025075
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttct 92  Q
    ||||| || ||||||||| || |||||||||||||| ||||||||||| |   ||||||| ||||||||||||||    
T  31025002 aagaatataatgtgagta-tgagagagaaagttgttaaaaaattgtcataatgtggttgtacaaatatcatttct 31025075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 32379929 - 32379972
Alignment:
Q  24 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtca 68  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||    
T  32379929 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgtca 32379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 12501556 - 12501500
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    ||||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  12501556 gagatgaaaagaacatcatataagta-tgtgagagaaagttgtttaaaaattgtcaca 12501500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 12500016 - 12500099
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| |||||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12500016 gagaggaaaagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12500099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 12507345 - 12507428
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| |||||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12507345 gagaggaaaagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12507428  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 12508885 - 12508802
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| |||||||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12508885 gagaggaaaagaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12508802  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 31636873 - 31636960
Alignment:
Q  144 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 232  Q
    |||||||| ||| |||||||| |  ||||||||||||||||  || ||||||||| | | ||||||||||||| |||||| ||||||||    
T  31636873 tggttaagaaaggcaaaagaggac-attttaaaccaaaagaaaaagtatttaatgtattaattacacaactttaaatgcaaatattacc 31636960  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 3339503 - 3339570
Alignment:
Q  28 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||||||| || ||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  3339503 tcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 3339570  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 25995507 - 25995440
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 95  Q
    ||||||||| || ||||||||||||| ||||||||| ||||   ||||||| |||||||||||||||||    
T  25995507 atgtgagta-tgagagagaaagttgtacaaaaattgccacaaaatggttgtacaaatatcatttctcaa 25995440  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 2056857 - 2056783
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| ||||||||||||| || |||||||||| || ||||| ||||||||   ||||||| |||||||||||||||    
T  2056857 aagaccatcatgtgagta-tgagagagaaagtagtacaaaagttgtcacaaattggttgtacaaatatcatttctc 2056783  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 5583645 - 5583596
Alignment:
Q  191 atttaatgcaatgattacacaactttgaatgcatatattaccctttttag 240  Q
    |||||||||| ||||||||||||||||| |||| |||||||  |||||||    
T  5583645 atttaatgcattgattacacaactttgattgcaaatattacattttttag 5583596  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 21210330 - 21210290
Alignment:
Q  24 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattg 65  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  21210330 aacatcatgtgagta-tgagagagaaagttgttcaaaaattg 21210290  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 17417241 - 17417306
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    ||||||||| || ||||||||||||| |||||||||||||   ||| |||| |||||||||||||||    
T  17417241 atgtgagta-tgagagagaaagttgtccaaaaattgtcacataatgattgtacaaatatcatttctc 17417306  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 33050257 - 33050182
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||| ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  33050257 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 33050182  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 13437272 - 13437198
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||||||  ||||||||| || |||| |||||||||||||| ||||||||   |||||||||||||||||||||||    
T  13437272 aagaacacaatgtgagta-tgagagaaaaagttgttcaaaagttgtcacaaaatggttgtgcaaatatcatttctc 13437198  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 37149478 - 37149561
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaa--ttgtcac--atggttgtgcaaatatcatttctc 93  Q
    ||||||||||||||||||| ||||| ||| ||||||||||| |  |||||  |||||||  |||||||| |||||||||||||||    
T  37149478 gagatgaaaagaacatcatatgagt-atgagagagaaagttctctaaaaaagttgtcacaaatggttgtacaaatatcatttctc 37149561  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 8326207 - 8326151
Alignment:
Q  13 gagatgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 70  Q
    ||||||| ||||||||||||||||| ||  ||||||||||||| |||| |||||||||    
T  8326207 gagatgataagaacatcatgtgagt-atcagagagaaagttgtgcaaacattgtcaca 8326151  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 30864414 - 30864488
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| |||||| |||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  30864414 aagaccatcatatgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 30864488  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 43079629 - 43079703
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    ||||| || ||||||||| || ||||||||||||| |||||||| |||||   ||||||| |||||||||||||||    
T  43079629 aagaatataatgtgagta-tgagagagaaagttgtccaaaaattatcacaaagtggttgtacaaatatcatttctc 43079703  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 44511213 - 44511139
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 93  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||||||   |||||||| | |||||||||||||    
T  44511213 aagaacatcatgtgagta-tgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctc 44511139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 2347062 - 2347131
Alignment:
Q  27 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    |||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| ||||||||||||||||    
T  2347062 atcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctca 2347131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 42118715 - 42118766
Alignment:
Q  45 gagaaagttgttcaaaaattgtcaca--tggttgtgcaaatatcatttctca 94  Q
    |||| |||||| ||||||||||||||  ||||||| ||||||||||||||||    
T  42118715 gagagagttgtccaaaaattgtcacaaatggttgtacaaatatcatttctca 42118766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 113690 - 113624
Alignment:
Q  30 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 94  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| ||||||||||||||||    
T  113690 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctca 113624  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 18669 - 18587
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaaaga 101  Q
    |||| ||||||||||||| || ||||||||||||| ||||| || |||||   ||||||| ||||||||||||||||| |||||    
T  18669 aagaccatcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattggttgtacaaatatcatttctcaataaaga 18587  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 249134 - 249213
Alignment:
Q  16 atgaaaagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 93  Q
    |||| |||| ||||||||||||| || ||||||||||||| ||||| || |||||   || ||||||||||||||||||||    
T  249134 atgataagaccatcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcatttctc 249213  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 31297 - 31366
Alignment:
Q  21 aagaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcattt 90  Q
    ||||||||||||||||||   |||||||||||||| ||||| |||| ||   |||||||| ||||||||||||    
T  31297 aagaacatcatgtgagta---tgagagaaagttgtccaaaagttgttacaaaatggttgtccaaatatcattt 31366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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