View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17932_high_2 (Length: 691)

Name: NF17932_high_2
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17932_high_2
NF17932_high_2
[»] chr6 (10 HSPs)
chr6 (18-676)||(6699195-6699854)
chr6 (506-588)||(27100721-27100803)
chr6 (459-586)||(10219536-10219660)
chr6 (211-359)||(10219536-10219685)
chr6 (549-606)||(24285317-24285373)
chr6 (424-588)||(515940-516101)
chr6 (436-487)||(33187117-33187168)
chr6 (513-586)||(13382467-13382540)
chr6 (448-492)||(9045520-9045564)
chr6 (432-542)||(23887711-23887818)
[»] chr4 (15 HSPs)
chr4 (459-593)||(13834319-13834450)
chr4 (509-606)||(12034362-12034458)
chr4 (460-588)||(11840018-11840143)
chr4 (459-575)||(17381533-17381646)
chr4 (459-593)||(40407621-40407751)
chr4 (475-588)||(32934139-32934249)
chr4 (456-547)||(8170736-8170825)
chr4 (506-590)||(4161617-4161701)
chr4 (402-490)||(51226033-51226121)
chr4 (459-588)||(11839765-11839891)
chr4 (264-334)||(12922218-12922289)
chr4 (474-593)||(45615782-45615899)
chr4 (459-589)||(50384346-50384471)
chr4 (510-574)||(24806482-24806546)
chr4 (405-489)||(46217137-46217221)
[»] chr7 (6 HSPs)
chr7 (423-589)||(46719964-46720127)
chr7 (264-337)||(10228752-10228826)
chr7 (535-585)||(45540049-45540099)
chr7 (509-586)||(34703628-34703704)
chr7 (508-587)||(21401749-21401827)
chr7 (512-593)||(18942729-18942810)
[»] chr5 (11 HSPs)
chr5 (459-586)||(16127049-16127173)
chr5 (510-588)||(11534997-11535075)
chr5 (212-314)||(14468770-14468871)
chr5 (468-585)||(6217635-6217749)
chr5 (432-487)||(29714640-29714695)
chr5 (264-354)||(32270609-32270700)
chr5 (510-588)||(11498057-11498135)
chr5 (495-577)||(42420314-42420398)
chr5 (326-385)||(3709305-3709365)
chr5 (456-488)||(9572514-9572546)
chr5 (449-555)||(37181082-37181184)
[»] chr3 (14 HSPs)
chr3 (459-585)||(621842-621963)
chr3 (420-492)||(51889847-51889919)
chr3 (506-593)||(46848397-46848484)
chr3 (421-484)||(48047886-48047949)
chr3 (512-586)||(23152313-23152386)
chr3 (495-584)||(53705968-53706057)
chr3 (475-585)||(14984407-14984513)
chr3 (264-347)||(45681174-45681258)
chr3 (449-492)||(43838796-43838839)
chr3 (210-297)||(46848391-46848478)
chr3 (261-333)||(43838807-43838880)
chr3 (509-586)||(51890053-51890130)
chr3 (262-314)||(22235487-22235539)
chr3 (211-299)||(30843823-30843911)
[»] chr8 (12 HSPs)
chr8 (272-489)||(21145429-21145648)
chr8 (210-482)||(17488031-17488301)
chr8 (508-579)||(21602205-21602276)
chr8 (506-588)||(17488220-17488302)
chr8 (496-585)||(3662316-3662405)
chr8 (508-578)||(7574379-7574448)
chr8 (510-588)||(7681041-7681119)
chr8 (474-593)||(41303149-41303265)
chr8 (420-492)||(6915335-6915407)
chr8 (457-489)||(10708438-10708470)
chr8 (212-299)||(21215898-21215985)
chr8 (251-299)||(21600441-21600489)
[»] chr1 (9 HSPs)
chr1 (420-588)||(6727940-6728105)
chr1 (412-470)||(13360142-13360200)
chr1 (403-484)||(32669845-32669926)
chr1 (538-586)||(8791946-8791994)
chr1 (509-587)||(27463937-27464015)
chr1 (260-314)||(30050598-30050652)
chr1 (436-478)||(39162576-39162618)
chr1 (425-489)||(35607238-35607302)
chr1 (506-590)||(38267438-38267522)
[»] chr2 (7 HSPs)
chr2 (210-299)||(40124262-40124351)
chr2 (459-587)||(20167575-20167700)
chr2 (237-287)||(28684026-28684076)
chr2 (209-278)||(11563326-11563395)
chr2 (262-369)||(12676431-12676540)
chr2 (456-488)||(29926868-29926900)
chr2 (474-544)||(34883939-34884006)


Alignment Details
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Original strand, 6699195 - 6699854
Alignment:
Q  18 acaacctcccccatcaatggatgcaagacgttgaaaattttgtcatttctcgtctttcaaataagccaaacagttaaatgtcaaatctacataacctcct 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  6699195 acaacctcccccatcaatggatgcaagacattgaaaattttgtcatttctcgtttttcaaataagccaaacagttaaatgtcaaatctacataaccttct 6699294  T
Q  118 ttgaaccctttctgtgtgctgggagaaagacacgaacaaccacggatcggggcattgaggtcaactgcccccactcgtccattattatttaaggtaatag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6699295 ttgaaccctttctgtgtgctgggagaaagacacgaacaaccacggatcggggcattgaggtcaactgcccccactcgtccattattgtttaaggtaatag 6699394  T
Q  218 tcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattcaaataa 317  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  6699395 tcactttgtttcttgaatatgtaactggtagcgacaatagccccttaatgtatcgaaattttaaaataatcgctgattgtgctatatgttattcaaataa 6699494  T
Q  318 tcttttacgttaaaatgtttcattagtattgtgatat-agtccatcaatatacgtacttgtggttatattgatctctataatcacttacttactctcata 416  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  6699495 tcttttacgttaaaatatttcattagtattgtgatattagtccatcaatatacgtacttatggtcatattgatctctataatcacttacttactctcata 6699594  T
Q  417 tttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  6699595 tttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcatattcaaggactattt 6699694  T
Q  517 tgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctttattatttttaaccaatatatactta 616  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6699695 tgaaaatttgatatattgagggactattatgcctacttgttatacatttagggaccaaaatgactattaccctttattatttttaaccaatatatactta 6699794  T
Q  617 gataattatgcattatgaacttgcttgcatggtattattcttgccacgttctatattcat 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6699795 gataattatgcattatgaacttgcttgcatggtattattcttgccacgttctatattcat 6699854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 588
Target Start/End: Original strand, 27100721 - 27100803
Alignment:
Q  506 aaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    |||||||||||||||| ||||||||||||| | ||||||||| |||||  ||| | |||||||||||||||||| ||||||||    
T  27100721 aaggactattttgaaattttgatatactgatgaactattatgactactgattacaaatttagggaccaaaatgactattaccc 27100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 586
Target Start/End: Complemental strand, 10219660 - 10219536
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    |||||||||||||  |||||||||||||||||||   ||||||| | | | |||||||||||| || || | | | |||||||||| || ||||| ||||    
T  10219660 tattttaacgtcagagactattttgactaacaaa---gtgcacaatcaggaactattttgaaatttcgacacattaagggactattgtggctactcgtta 10219564  T
Q  559 tacatttagggaccaaaatgattattac 586  Q
     ||||| |||||||||||||| ||||||    
T  10219563 cacattcagggaccaaaatgactattac 10219536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 10219536 - 10219685
Alignment:
Q  211 gtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttatt 310  Q
    |||||||||| |||| | | ||||| ||||||  ||||| |||||||  ||||||||| ||||||||||||||||||   |||||||||  | ||||| |    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagt 10219635  T
Q  311 c-aaataatcttttacgttaaaatgtttcattagtattgtgatatagtcc 359  Q
    | ||||| ||| | ||||||||||  ||| ||| |||||| |||||||||    
T  10219636 caaaatagtctctgacgttaaaataattcgttaatattgtcatatagtcc 10219685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 549 - 606
Target Start/End: Original strand, 24285317 - 24285373
Alignment:
Q  549 ctacttgttatacatttagggaccaaaatgattattaccctttattatttttaaccaa 606  Q
    |||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||    
T  24285317 ctacttgttacacatttagggaccaaaatgattattacgcctt-ttatttttaaccaa 24285373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 588
Target Start/End: Original strand, 515940 - 516101
Alignment:
Q  424 ctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaat 523  Q
    |||||||| |||||||||||| |||||||| |||| || ||||| |||  |||||||||||||||| |   |||||||| | |  |||||||||| || |    
T  515940 ctatatgaaaagagttaatgtcaatattgagggaccatcttaacatcagagactattttgactaacga---agtgcacaatcattgactattttggaatt 516036  T
Q  524 ttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    | |||| |   ||  ||| || || ||||| |||| ||||| |||||||||||||| ||||||||    
T  516037 tcgatacatcaagttactgttgtgactactcgttacacattcagggaccaaaatgactattaccc 516101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 487
Target Start/End: Complemental strand, 33187168 - 33187117
Alignment:
Q  436 agttaatgttaatattgatggactattttaacgtcaatgactattttgacta 487  Q
    ||||| ||| || ||||| | |||||||||||||||||||||||||||||||    
T  33187168 agttattgtcaacattgaagaactattttaacgtcaatgactattttgacta 33187117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 586
Target Start/End: Original strand, 13382467 - 13382540
Alignment:
Q  513 attttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattac 586  Q
    ||||| ||| ||||||| | |||  |||||||| | ||| |||||||||||||| |||| ||||||||||||||    
T  13382467 attttaaaattttgatacattgacagactattacgactatttgttatacatttaaggactaaaatgattattac 13382540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 9045520 - 9045564
Alignment:
Q  448 tattgatggactattttaacgtcaatgactattttgactaacaaa 492  Q
    ||||||| || ||||||| |||||||||||||||| |||||||||    
T  9045520 tattgatagattattttagcgtcaatgactattttaactaacaaa 9045564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 432 - 542
Target Start/End: Original strand, 23887711 - 23887818
Alignment:
Q  432 gaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatata 531  Q
    ||||||||| ||| | |||||| | | ||||||| ||||   ||||||||||||| |||||   ||||||| ||| |||||||||||||| ||  |||||    
T  23887711 gaagagttattgtgagtattgaggaattattttatcgtccgagactattttgacttacaaa---gtgcacaattagggactattttgaaatttgtatata 23887807  T
Q  532 ctgagggacta 542  Q
     ||||||||||    
T  23887808 ttgagggacta 23887818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 459 - 593
Target Start/End: Complemental strand, 13834450 - 13834319
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    |||||||| || || |||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||| | |||||||||||||||  ||||  |||    
T  13834450 tattttaatgttaaagactattttgactaacaaa---gtgcacaatcaaggactattttaaaattttgataaattgagggactattatggttactcctta 13834354  T
Q  559 tacatttagggaccaaaatgattattaccctttat 593  Q
     ||||| |||||||||||| |||||||||||||||    
T  13834353 cacattcagggaccaaaataattattaccctttat 13834319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 509 - 606
Target Start/End: Complemental strand, 12034458 - 12034362
Alignment:
Q  509 gactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctttattatttttaaccaa 606  Q
    |||||||||| || ||||||| | |||||||||||| || ||||| |||||||||| |||||||||||||| |||||||| || ||||||||||||||    
T  12034458 gactattttgcaattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgactattacccctt-ttatttttaaccaa 12034362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 588
Target Start/End: Original strand, 11840018 - 11840143
Alignment:
Q  460 attttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttat 559  Q
    ||||||||||||  ||||||||||| |||||||   ||||||| | | |||||||||||||| ||||||| | |||||| |||||  | |||||  |||     
T  11840018 attttaacgtcagggactattttgattaacaaa---gtgcacaatcagggactattttgaaattttgatacattgagggcctattgcgactactccttac 11840114  T
Q  560 acatttagggaccaaaatgattattaccc 588  Q
     |||| |||||||||||||| ||||||||    
T  11840115 gcattcagggaccaaaatgactattaccc 11840143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 575
Target Start/End: Original strand, 17381533 - 17381646
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    ||||||||  |||| ||||||||||| |||||||   ||||||| | | ||||||||||| || ||||||| | |||||||||||| || ||||||||||    
T  17381533 tattttaatatcaaggactattttgattaacaaa---gtgcacaatcagggactattttggaattttgatacattgagggactattgtgactacttgtta 17381629  T
Q  559 tacatttagggaccaaa 575  Q
      |||| ||||||||||    
T  17381630 ctcattcagggaccaaa 17381646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 593
Target Start/End: Original strand, 40407621 - 40407751
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    |||||||| || |||| | |||||||||| ||||||    |||| | || ||||||||| ||| ||||||| | ||| |||||||||||  ||||  |||    
T  40407621 tattttaatgttaatggcaattttgactagcaaatg----cacaatcaatgactattttaaaattttgatacattgaaggactattatggttactcctta 40407716  T
Q  559 tacatttagggaccaaaatgattattaccctttat 593  Q
     ||||| |||||||||||| |||||||||||||||    
T  40407717 cacattcagggaccaaaataattattaccctttat 40407751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 32934139 - 32934249
Alignment:
Q  475 actattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaa 574  Q
    ||||||||||||| ||||   ||||||| | ||  |||||||| ||| ||||||| | |||||||||||||||   |||  ||| ||||| |||||||||    
T  32934139 actattttgactagcaaa---gtgcacaatcaaaaactattttaaaattttgatacattgagggactattatggtcactccttacacattcagggaccaa 32934235  T
Q  575 aatgattattaccc 588  Q
    ||||||||||||||    
T  32934236 aatgattattaccc 32934249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 456 - 547
Target Start/End: Complemental strand, 8170825 - 8170736
Alignment:
Q  456 gactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaa-atttgatatactgagggactattatg 547  Q
    ||||||||| ||||||  ||||||||||||||||||   |||||||| | || |||||||||||||  ||||||||| ||| |||||||||||    
T  8170825 gactattttgacgtcagagactattttgactaacaa---agtgcacaatcaaagactattttgaaatttttgatatattgatggactattatg 8170736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 590
Target Start/End: Complemental strand, 4161701 - 4161617
Alignment:
Q  506 aaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctt 590  Q
    |||||||||||||||| ||||||| | ||| |||||||| || |||||  ||| |||||| ||||| ||| ||| ||||||||||    
T  4161701 aaggactattttgaaattttgatacattgaaggactattgtgactactcattacacatttggggacgaaagtgactattaccctt 4161617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 490
Target Start/End: Original strand, 51226033 - 51226121
Alignment:
Q  402 ttacttactctcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaaca 490  Q
    ||||||| | |||||||  ||| |||| || |||||||| ||| || ||||| | ||||||||||| ||||| ||||||||||||||||    
T  51226033 ttacttattgtcatattaatccttataagaaaagagttattgtaaacattgaggaactattttaacttcaataactattttgactaaca 51226121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 588
Target Start/End: Complemental strand, 11839891 - 11839765
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    |||||||| ||||| |||||||||||||||| |    ||||||| |   |||||||||||||| || |||||| |||||||||||| || ||||| ||||    
T  11839891 tattttaatgtcaaggactattttgactaacgag---gtgcacaatctgggactattttgaaatttcgatatattgagggactattgtggctactcgtta 11839795  T
Q  559 tacatttagggaccaaaatgattattaccc 588  Q
     | ||| |  ||||||||||  ||||||||    
T  11839794 caaattcatagaccaaaatggctattaccc 11839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 12922218 - 12922289
Alignment:
Q  264 aatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattcaaataa-tcttttacgttaaaatg 334  Q
    ||||||||||||||||||||||||  ||||||||||   |||||| ||||| || | |||||||||||||||    
T  12922218 aatgtatcgaaatttcaaaatagtttttgattgtgcacgatgttagtcaaaaaagttttttacgttaaaatg 12922289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 593
Target Start/End: Original strand, 45615782 - 45615899
Alignment:
Q  474 gactattttgactaacaaatgagtgcacatttaaggactattttgaaaattt-gatatactgagggactattatgcctacttgttatacatttagggacc 572  Q
    ||||||||||||||||||| | |  |||| | |||||||||||  ||||||| || | | |||||||||||||||   |||  ||| ||||| |||||||    
T  45615782 gactattttgactaacaaa-gtgcacacaatcaaggactattt--aaaatttcgaaacattgagggactattatggtcactccttacacattcagggacc 45615878  T
Q  573 aaaatgattattaccctttat 593  Q
    ||||| |||||||||||||||    
T  45615879 aaaataattattaccctttat 45615899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 589
Target Start/End: Complemental strand, 50384471 - 50384346
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    ||||||| ||||||||||||||  |||||||| |   ||||||| | |  ||||||||||||| ||| ||| | || || ||||||||| ||| |  |||    
T  50384471 tattttagcgtcaatgactatt--gactaacata---gtgcacaatcagagactattttgaaattttaatacattggggtactattatggctaatcatta 50384377  T
Q  559 tacatttagggaccaaaatgattattaccct 589  Q
     ||||| ||| ||||||||||||||||||||    
T  50384376 cacattcaggaaccaaaatgattattaccct 50384346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 510 - 574
Target Start/End: Complemental strand, 24806546 - 24806482
Alignment:
Q  510 actattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaa 574  Q
    |||||||| ||| ||| ||| | ||| ||||||| ||| ||| ||||||||||||||||||||||    
T  24806546 actattttaaaattttaatacattgaaggactataatgactatttgttatacatttagggaccaa 24806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 489
Target Start/End: Original strand, 46217137 - 46217221
Alignment:
Q  405 cttactctcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaac 489  Q
    |||||| ||||||  |||| ||||||| |||||||||||| |  |||||  || |||||| |||| || ||||||||||||||||    
T  46217137 cttactgtcatataagtccttatatgaaaagagttaatgtcagcattgagagattattttgacgttaaagactattttgactaac 46217221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 46719964 - 46720127
Alignment:
Q  423 cctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaa 522  Q
    ||||||| | |||||||||| | ||||| || ||||||||||||||||||  |||||||||||||||||   |||||||| | ||  || ||||| |||     
T  46719964 cctatataaaaagagttaatataaatatcgaaggactattttaacgtcaaaaactattttgactaacaa---agtgcacaatcaaataccattttaaaat 46720060  T
Q  523 tttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccct 589  Q
    ||  ||| | |||||||||||| || ||||||||||| |||| ||| |||| ||||| |||||||||    
T  46720061 ttcaatacattgagggactattgtgactacttgttattcattcaggaaccataatgactattaccct 46720127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 10228752 - 10228826
Alignment:
Q  264 aatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc-aaataatcttttacgttaaaatgttt 337  Q
    ||||||||||||||||||||||||| |||||||||| ||  |||| || ||||| ||||| || |||||||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttt 10228826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 585
Target Start/End: Original strand, 45540049 - 45540099
Alignment:
Q  535 agggactattatgcctacttgttatacatttagggaccaaaatgattatta 585  Q
    |||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  45540049 agggactattgtgtcaactcgttatacatttagggaccaaaatgattatta 45540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 586
Target Start/End: Complemental strand, 34703704 - 34703628
Alignment:
Q  509 gactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattac 586  Q
    ||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||||||| ||| |||||||| ||||||    
T  34703704 gactatttt-aaaatttgatacattgatggactattgtgactactcgttatacatttatggatcaaaatgactattac 34703628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 587
Target Start/End: Complemental strand, 21401827 - 21401749
Alignment:
Q  508 ggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattacc 587  Q
    |||||||||| ||| || |||||| |||||||||||| |  ||||| |||| |||||||| ||||||||||| |||||||    
T  21401827 ggactatttt-aaatttcgatatagtgagggactattgtagctactcgttacacatttagagaccaaaatgactattacc 21401749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 593
Target Start/End: Complemental strand, 18942810 - 18942729
Alignment:
Q  512 tattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctttat 593  Q
    |||||| ||| ||||||| | |||| |||||||||| ||| |  ||| ||||| |||||||||||||| |||||||| ||||    
T  18942810 tattttaaaattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgactattaccccttat 18942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 586
Target Start/End: Complemental strand, 16127173 - 16127049
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    ||||||||||||||  | ||||||||||||||||  |   |||| | |||||||||||||||| |||||||   |||| ||||||| || |||||  |||    
T  16127173 tattttaacgtcaaatattattttgactaacaaacta---cacaatcaaggactattttgaaattttgatactttgagagactattgtgactactcctta 16127077  T
Q  559 tacatttagggaccaaaatgattattac 586  Q
     |||||||||||||||||||| ||||||    
T  16127076 cacatttagggaccaaaatgactattac 16127049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 11534997 - 11535075
Alignment:
Q  510 actattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    |||||||| ||| ||||||| | |||||||||| || |  ||||| ||| |||||||||||||||||| ||||||||||    
T  11534997 actattttaaaattttgatacattgagggactactagggttacttcttacacatttagggaccaaaataattattaccc 11535075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 14468770 - 14468871
Alignment:
Q  212 taatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc 311  Q
    |||||||||  ||| | ||||||||||||||   |||| ||||||| || | ||||||||||||||||||||||||| || |||||||  ||||||| ||    
T  14468770 taatagtcatgttggtccttgaatatgtaacgaatagctacaatag-tcatcaatgtatcgaaatttcaaaatagtccttaattgtgcactatgttaatc 14468868  T
Q  312 aaa 314  Q
    |||    
T  14468869 aaa 14468871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 585
Target Start/End: Original strand, 6217635 - 6217749
Alignment:
Q  468 gtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttag 567  Q
    ||||| |||||||||||||||| ||   ||||| | | | |||||||||||||| ||||||| | |||||||||||| || ||| | | || ||||| |     
T  6217635 gtcaaagactattttgactaacgaa---gtgcataatcatggactattttgaaattttgatacattgagggactattgtggctattcgctacacattcat 6217731  T
Q  568 ggaccaaaatgattatta 585  Q
    |||||||||||| |||||    
T  6217732 ggaccaaaatgactatta 6217749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 29714640 - 29714695
Alignment:
Q  432 gaagagttaatgttaatattgatggactattttaacgtcaatgactattttgacta 487  Q
    ||||||||||||| || ||||||| | |||||||| ||| ||||||||||||||||    
T  29714640 gaagagttaatgtcaacattgatgaattattttaatgtcgatgactattttgacta 29714695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 32270700 - 32270609
Alignment:
Q  264 aatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc-aaataatcttttacgttaaaatgtttcattagtattgtgatat 354  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||| || ||||| ||  |||||||||| | |||| ||| |||||| ||||    
T  32270700 aatgtatcgaaatttcaaaataatctatgattgtgcgatatgttagtcaaaatagtcccttacgttaaagtatttcgttaatattgtcatat 32270609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 11498057 - 11498135
Alignment:
Q  510 actattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    |||||||| ||| ||||||| | |||||||||| || |  ||||| ||| ||||| |||||||||||| ||||||||||    
T  11498057 actattttaaaattttgatacattgagggactactagggttacttcttacacattcagggaccaaaataattattaccc 11498135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 577
Target Start/End: Complemental strand, 42420398 - 42420314
Alignment:
Q  495 agtgcacatttaaggacta--ttttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaat 577  Q
    |||||||||| ||||||||  ||||||||  |||||| | |||||||| |||||| ||| |||||| ||||| | ||||||||||    
T  42420398 agtgcacattcaaggactattttttgaaatgttgatacattgagggacgattatgactatttgttacacattcatggaccaaaat 42420314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 3709305 - 3709365
Alignment:
Q  326 gttaaaatgtttcattagtattgtgata-tagtccatcaatatacgtacttgtggttatat 385  Q
    ||||||||||||||||| |||||| ||| |||||| |||| |||| ||||| |||||||||    
T  3709305 gttaaaatgtttcattaatattgtaatattagtccctcaacatacttacttatggttatat 3709365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 488
Target Start/End: Complemental strand, 9572546 - 9572514
Alignment:
Q  456 gactattttaacgtcaatgactattttgactaa 488  Q
    ||||||||||||||||| |||||||||||||||    
T  9572546 gactattttaacgtcaaagactattttgactaa 9572514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 449 - 555
Target Start/End: Complemental strand, 37181184 - 37181082
Alignment:
Q  449 attgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgc 548  Q
    ||||||||| ||||||| |||||  |||||||||||||||||   || |||||| |||| |||| |||| ||| ||| ||||| | || ||||||||||     
T  37181184 attgatggattattttagcgtcatagactattttgactaaca---gattgcacaattaaagact-ttttaaaattttaatatattaagagactattatga 37181089  T
Q  549 ctacttg 555  Q
    |||||||    
T  37181088 ctacttg 37181082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 585
Target Start/End: Original strand, 621842 - 621963
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    ||||||||| |||| ||||||||||||||||||   |||||||| ||| |||||||||||||| ||||||| | |||  |||||||||| |||||  |||    
T  621842 tattttaacatcaaagactattttgactaacaa---agtgcacagttagggactattttgaaattttgatacattga--gactattatgactactcatta 621936  T
Q  559 tacatttagggaccaaaatgattatta 585  Q
     ||||| || ||||||| ||| |||||    
T  621937 cacattcagagaccaaagtgactatta 621963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 51889919 - 51889847
Alignment:
Q  420 gtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaa 492  Q
    |||||||||||| |||||||| ||| | ||||||  || ||||||| ||||||||| ||||||||||||||||    
T  51889919 gtccctatatgaaaagagttattgtgagtattgagagattattttagcgtcaatgattattttgactaacaaa 51889847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 593
Target Start/End: Original strand, 46848397 - 46848484
Alignment:
Q  506 aaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctttat 593  Q
    |||||||||||||||| ||||||| | ||||| |||||| || |||||  ||| ||||| |||||||||| ||| |||||||| ||||    
T  46848397 aaggactattttgaaattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattaccccttat 46848484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 48047949 - 48047886
Alignment:
Q  421 tccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttga 484  Q
    ||||||||||| |||||||| ||| || ||||| |||||||||||||||||  |||||||||||    
T  48047949 tccctatatgaaaagagttattgtcaacattgagggactattttaacgtcatggactattttga 48047886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 586
Target Start/End: Original strand, 23152313 - 23152386
Alignment:
Q  512 tattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattac 586  Q
    |||||||||| |||||||   |||| |||||||||||||| |||||| ||||||| |||| ||||||||||||||    
T  23152313 tattttgaaattttgatact-tgagagactattatgcctatttgttacacatttacggactaaaatgattattac 23152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 584
Target Start/End: Original strand, 53705968 - 53706057
Alignment:
Q  495 agtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattatt 584  Q
    |||||||| ||| |||||||||||||| || |||| | |||||||||||| || |||||||||| ||| | |  ||||||||||| ||||    
T  53705968 agtgcacaattatggactattttgaaatttcgatacagtgagggactattttggctacttgttacacaatcaaagaccaaaatgactatt 53706057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 585
Target Start/End: Complemental strand, 14984513 - 14984407
Alignment:
Q  475 actattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaa 574  Q
    ||||||||||||||| ||   ||||||| | | ||| |||||||||| || |||||| |||||||||||| || ||||| |||| ||||| | |||||||    
T  14984513 actattttgactaacgaa---gtgcacaatcagggagtattttgaaatttcgatatattgagggactattgtgactactcgttacacattca-ggaccaa 14984418  T
Q  575 aatgattatta 585  Q
    ||||| |||||    
T  14984417 aatgactatta 14984407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 45681174 - 45681258
Alignment:
Q  264 aatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc-aaataatcttttacgttaaaatgtttcattagtatt 347  Q
    |||||||| |||||||||||||||| ||||||||||  ||| ||| || ||||| ||| ||| ||||||||||||| ||| ||||    
T  45681174 aatgtatcaaaatttcaaaatagtccttgattgtgcgctatattaatcaaaatagtctcttatgttaaaatgtttctttaatatt 45681258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 43838796 - 43838839
Alignment:
Q  449 attgatggactattttaacgtcaatgactattttgactaacaaa 492  Q
    ||||||| | |||||||||||||| |||||||||||||||||||    
T  43838796 attgatgaattattttaacgtcaaagactattttgactaacaaa 43838839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 46848478 - 46848391
Alignment:
Q  210 ggtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgt 297  Q
    |||||||||||||||| | | ||||| |||||   ||||  | ||||| |||| |||||||| |||||||||||||||| ||||||||    
T  46848478 ggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtccttgattgt 46848391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 43838880 - 43838807
Alignment:
Q  261 cttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc-aaataatcttttacgttaaaat 333  Q
    ||||||||||| |||||| ||||||||| ||||||||||  | ||||| || ||||| ||||| ||||||||||    
T  43838880 cttaatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtctttgacgttaaaat 43838807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 586
Target Start/End: Original strand, 51890053 - 51890130
Alignment:
Q  509 gactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattac 586  Q
    ||||||||||||||||  ||| |||||||||||||| |  ||| ||||   ||||| |||||||||||||| ||||||    
T  51890053 gactattttgaaaattcaatacactgagggactattgtagctagttgtggcacattaagggaccaaaatgactattac 51890130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 22235539 - 22235487
Alignment:
Q  262 ttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattcaaa 314  Q
    |||||||||||||||||||||||| |  |||||||||| || ||||| |||||    
T  22235539 ttaatgtatcgaaatttcaaaataatttttgattgtgcaatttgttagtcaaa 22235487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 30843911 - 30843823
Alignment:
Q  211 gtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgc 299  Q
    ||||||||||||||| ||| ||||| |||||   ||||  |||||||   ||||||||||| ||||| ||||||||||  |||||||||    
T  30843911 gtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgc 30843823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 489
Target Start/End: Original strand, 21145429 - 21145648
Alignment:
Q  272 gaaatttcaaaatagtcgttgattgtgctatatgttattcaaa-taatcttttacgttaaaatgtttcattagtattgtgatat-agtccatcaatatac 369  Q
    ||||||||||||||||   | |||||||  ||||||| ||||| || ||| ||||||||||||||||| ||| |||| | |||| ||||  |||||||||    
T  21145429 gaaatttcaaaatagttcataattgtgcactatgttagtcaaaatagtctcttacgttaaaatgtttcgttaatattatcatattagtctctcaatatac 21145528  T
Q  370 gtacttgtggttatattgatctctataatcacttacttactctcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgt 469  Q
     |||||   || ||||   ||  |||||  ||||||| ||| || |||  |||||||||| | |||||||||||| |  ||||| ||||||||||||| |    
T  21145529 ttacttactgtcatatcagtccttataagtacttactcactgtcctatcagtccctatataaaaagagttaatgtcagcattgagggactattttaacat 21145628  T
Q  470 caatgactattttgactaac 489  Q
    ||  ||||||||||||||||    
T  21145629 cagagactattttgactaac 21145648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 482
Target Start/End: Complemental strand, 17488301 - 17488031
Alignment:
Q  210 ggtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttat 309  Q
    ||||| ||||| |||| | | ||||| ||||||| ||||  |||||||  ||| |||||| |||||||||||||||||| |||||||||   ||||||      
T  17488301 ggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtccttgattgtgaattatgttgg 17488202  T
Q  310 tc-aaataatcttttacgttaaaatgtttcattagtattgtgata-tagtccatcaatatacgtacttgtggttatattgatctctataatcacttactt 407  Q
    || |||||  | |||| ||||||||||||| ||| ||| || ||| |||||| ||||||||| ||||| |    ||||   || ||||||     |||||    
T  17488201 tcaaaatagccatttatgttaaaatgtttcgttaatatcgtcatattagtccctcaatatacttacttattaccatatcagtccctataa----gtactt 17488106  T
Q  408 actctcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactatttt 482  Q
    ||| ||| ||  || ||||||||| |||||||||||| || ||||| |||||||||||| ||||  |||||||||    
T  17488105 actgtcacatcagttcctatatgaaaagagttaatgtcaacattgacggactattttaatgtcacagactatttt 17488031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 508 - 579
Target Start/End: Original strand, 21602205 - 21602276
Alignment:
Q  508 ggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatga 579  Q
    |||||||||||||| || |||||| |||||||| |||||| |||||||||  ||||| | ||||||||||||    
T  21602205 ggactattttgaaatttcgatatattgagggaccattatggctacttgttgcacattcaaggaccaaaatga 21602276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 588
Target Start/End: Original strand, 17488220 - 17488302
Alignment:
Q  506 aaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    |||||||||||||||| || | || | |||||||||||| || |||||||||| ||||| ||||| |||||||| | ||||||    
T  17488220 aaggactattttgaaatttcgctacattgagggactattgtgactacttgttacacattcagggagcaaaatgactgttaccc 17488302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 585
Target Start/End: Complemental strand, 3662405 - 3662316
Alignment:
Q  496 gtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattatta 585  Q
    ||||||| | ||| |||||||| ||| ||||||| | |||||||||||||||  ||||  ||| ||| |||||||||||||| |||||||    
T  3662405 gtgcacaatcaagaactattttaaaattttgatacattgagggactattatggttactccttacacaattagggaccaaaataattatta 3662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 578
Target Start/End: Complemental strand, 7574448 - 7574379
Alignment:
Q  508 ggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatg 578  Q
    |||||||||||||| ||||||| | || ||||||||||||  ||||||||| ||||| | |||||||||||    
T  7574448 ggactattttgaaa-tttgatacattgtgggactattatgattacttgttacacattcaaggaccaaaatg 7574379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 7681041 - 7681119
Alignment:
Q  510 actattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    |||||||| ||| ||||||| | |||||||||| || |  ||||| ||| ||||| |||||||||||| ||||||||||    
T  7681041 actattttaaaattttgatacattgagggactactagggttacttcttacacattcagggaccaaaataattattaccc 7681119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 593
Target Start/End: Original strand, 41303149 - 41303265
Alignment:
Q  474 gactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggacca 573  Q
    |||||||||||||| ||||   ||||| | | || ||||||||| ||| ||||||| | ||||||||||||||   ||||  ||| || || ||||||||    
T  41303149 gactattttgactagcaaa---gtgcataatcaatgactattttaaaattttgatacattgagggactattattgttactccttacaccttcagggacca 41303245  T
Q  574 aaatgattattaccctttat 593  Q
    |||| |||||||||| ||||    
T  41303246 aaataattattaccccttat 41303265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 6915407 - 6915335
Alignment:
Q  420 gtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaa 492  Q
    |||||||||||| |||||| |||||  |||| |||| || ||||| |||| |  |||||||||||||||||||    
T  6915407 gtccctatatgaaaagagtcaatgtcgatatcgatgaaccattttcacgttatggactattttgactaacaaa 6915335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 457 - 489
Target Start/End: Complemental strand, 10708470 - 10708438
Alignment:
Q  457 actattttaacgtcaatgactattttgactaac 489  Q
    |||||||||||||||| ||||||||||||||||    
T  10708470 actattttaacgtcaaagactattttgactaac 10708438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 21215898 - 21215985
Alignment:
Q  212 taatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctcctt-aatgtatcgaaatttcaaaatagtcgttgattgtgc 299  Q
    ||||||||| |||| |  ||||||||| ||   ||||| ||||||| ||||| ||||||| ||||||||||||||||| ||||||||||    
T  21215898 taatagtcattttggtcattgaatatggaatgagtagccacaatag-tccttcaatgtattgaaatttcaaaatagtcattgattgtgc 21215985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 21600441 - 21600489
Alignment:
Q  251 acaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgc 299  Q
    |||||||  |||||||||||| |||||| ||||||||| ||||||||||    
T  21600441 acaatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgc 21600489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 588
Target Start/End: Original strand, 6727940 - 6728105
Alignment:
Q  420 gtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttga 519  Q
    |||| |||| || |||||||| ||| || ||||| | |||||||||| ||||| |||||||||||||||||    |||||||| |  | ||||||||||     
T  6727940 gtccttataagaaaagagttagtgtcaacattgaagcactattttaaagtcaaagactattttgactaaca---tagtgcacaatggaagactattttgg 6728036  T
Q  520 aaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccc 588  Q
    || ||||||  | ||| |||||||| || ||| | |||| ||||| |||||| ||||||| ||| ||||    
T  6728037 aattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgactatcaccc 6728105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 13360200 - 13360142
Alignment:
Q  412 tcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtc 470  Q
    ||||||| |||  ||||||| |||||||| ||| |||||||||||||||||||||||||    
T  13360200 tcatattagtcattatatgaaaagagttattgtcaatattgatggactattttaacgtc 13360142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 32669926 - 32669845
Alignment:
Q  403 tacttactctcatatttgtccctatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttga 484  Q
    |||||||| |||||||||||||||||||| ||||||| |||| || ||||| ||| | ||||||| |||  ||| |||||||    
T  32669926 tacttactgtcatatttgtccctatatgaaaagagttcatgtcaacattgagggattgttttaacatcagggaccattttga 32669845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 538 - 586
Target Start/End: Original strand, 8791946 - 8791994
Alignment:
Q  538 gactattatgcctacttgttatacatttagggaccaaaatgattattac 586  Q
    |||||||||| |||||||||||||||| ||| |||||||||| ||||||    
T  8791946 gactattatggctacttgttatacattaaggcaccaaaatgactattac 8791994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 587
Target Start/End: Original strand, 27463937 - 27464015
Alignment:
Q  509 gactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattacc 587  Q
    ||||||||||||| ||||||| | |||| ||||| ||||  ||||  ||| |||||||||||||| ||||| |||||||    
T  27463937 gactattttgaaattttgatacattgagagactagtatggttactccttacacatttagggaccacaatgactattacc 27464015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 30050652 - 30050598
Alignment:
Q  260 ccttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattcaaa 314  Q
    |||||||||||||||||||||||||||||  ||||| ||| || ||||| |||||    
T  30050652 ccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaaa 30050598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 478
Target Start/End: Original strand, 39162576 - 39162618
Alignment:
Q  436 agttaatgttaatattgatggactattttaacgtcaatgacta 478  Q
    ||||||||| || |||||||||||||||||||||||| |||||    
T  39162576 agttaatgtcaacattgatggactattttaacgtcaaagacta 39162618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 35607302 - 35607238
Alignment:
Q  425 tatatgagaagagttaatgttaatattgatggactattttaacgtcaatgactattttgactaac 489  Q
    ||||||| ||| |||| ||| |||||||| ||| |||||||||||||  || |||||||||||||    
T  35607302 tatatgaaaagtgttattgtcaatattgaaggattattttaacgtcatagattattttgactaac 35607238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 506 - 590
Target Start/End: Original strand, 38267438 - 38267522
Alignment:
Q  506 aaggactattttgaaaatttgatatactgagggactattatgcctacttgttatacatttagggaccaaaatgattattaccctt 590  Q
    ||||| |||||||||| ||| ||| | |||||||||||| || | ||||  || | ||| |||||||||||||| ||||||||||    
T  38267438 aaggattattttgaaatttttatacattgagggactattgtgaccacttactacatattgagggaccaaaatgactattaccctt 38267522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 40124262 - 40124351
Alignment:
Q  210 ggtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagtcgttgattgtgc 299  Q
    |||||||||||||||| | ||||||| ||||||  ||||  |||||||  | ||||||||||||||||| ||||| |||  |||||||||    
T  40124262 ggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgc 40124351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 587
Target Start/End: Original strand, 20167575 - 20167700
Alignment:
Q  459 tattttaacgtcaatgactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactattatgcctacttgtta 558  Q
    |||||||| ||||  |||||||||| ||||||||   ||| ||| | | ||| ||||||| || ||||||  | |||| ||||||| || ||||||||||    
T  20167575 tattttaatgtcagagactattttgtctaacaaa---gtgtacaatcagggaatattttgcaattttgatgcattgagtgactattgtgactacttgtta 20167671  T
Q  559 tacatttagggaccaaaatgattattacc 587  Q
     |||||||  ||||||||||| |||||||    
T  20167672 cacatttaaagaccaaaatgactattacc 20167700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 28684026 - 28684076
Alignment:
Q  237 tgtaacatgtagcgacaatagctccttaatgtatcgaaatttcaaaatagt 287  Q
    ||||||| ||||| |||||| ||||||||||||||||||||  ||||||||    
T  28684026 tgtaacaagtagccacaataactccttaatgtatcgaaattctaaaatagt 28684076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 11563326 - 11563395
Alignment:
Q  209 aggtaatagtcactttgtttcttgaatatgtaacatgtagcgacaatagctccttaatgtatcgaaattt 278  Q
    ||||||||||||||||| | ||| ||| |||||||  || | |||||||| ||| |||||||||||||||    
T  11563326 aggtaatagtcactttgatccttaaatgtgtaacaaataactacaatagcccctcaatgtatcgaaattt 11563395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 369
Target Start/End: Original strand, 12676431 - 12676540
Alignment:
Q  262 ttaatgtatcgaaatttcaaaatagtcgttgattgtgctatatgttattc-aaataatcttttacgttaaaatgtttcattagtattgtgata-tagtcc 359  Q
    ||||||||||||||| | |||||||||  |||||||||  |  |||| || ||||||| | | |||||||||||||| |||| |||||| ||| ||||||    
T  12676431 ttaatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatattagtcc 12676530  T
Q  360 atcaatatac 369  Q
     |||||||||    
T  12676531 ctcaatatac 12676540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 29926868 - 29926900
Alignment:
Q  456 gactattttaacgtcaatgactattttgactaa 488  Q
    ||||||||||||||||| |||||||||||||||    
T  29926868 gactattttaacgtcaaagactattttgactaa 29926900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 544
Target Start/End: Complemental strand, 34884006 - 34883939
Alignment:
Q  474 gactattttgactaacaaatgagtgcacatttaaggactattttgaaaatttgatatactgagggactatt 544  Q
    |||||||||||||||||   ||||||||| |||  ||||||||| ||| ||||||| | ||||||||||||    
T  34884006 gactattttgactaaca---gagtgcacaattagagactattttaaaattttgatacattgagggactatt 34883939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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