View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_high_4 (Length: 524)
Name: NF17932_high_4
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46576730 - 46576425
Alignment:
| Q |
1 |
aaatctaattgtaaaaccatagttcttgtccgcatgctaacgtgacaccataaagataaacacgtttaatttgcaatcgttgtctatcttcttcctcacn |
100 |
Q |
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| T |
46576730 |
aaatctaattgtaaaaccatagttcttgtccgcatgctaacgtgacaccataaagataaacacgtttaatttgcaatcgttgtctatcttcttcctcact |
46576631 |
T |
|
| Q |
101 |
nnnnnnnnnnngatggaatcttcttccactcacgatttaggagtctttttgtttttcaattgtcctccatttattatagaaaataacacagacagtgatg |
200 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46576630 |
ttttgttttttgaaggaatcttcttccactcacgatttaggcgtctttttgtttttcaattgtcctccatttattatagaaaataacacagacagtgatg |
46576531 |
T |
|
| Q |
201 |
tcaagtgtataagaatgcttgagtcatnnnnnnngtttaaagaatgccatatttgttcaaatcagctttcccttatcttgacattttccttataccattt |
300 |
Q |
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| T |
46576530 |
tcaagtgtataagagtgcttgagtcataaaaaaagtttaaagaatgccatattcgttcaaatcagctttcccttatcttgacattttccttataccattt |
46576431 |
T |
|
| Q |
301 |
attatt |
306 |
Q |
| |
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|||||| |
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| T |
46576430 |
attatt |
46576425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 298 - 506
Target Start/End: Complemental strand, 46576241 - 46576033
Alignment:
| Q |
298 |
tttattatttatgttcacctttttgtttcgataaattgaactatacggaattgattggtctccctgaaaaaatcaaatgaatttaacgtacaaaatgtgt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46576241 |
tttattatttatgttcacctttttgtttcgataaattgaactatacggaattgattggtctccctgaaaaaatcaaatgaatttaacgtacaaaatgtgt |
46576142 |
T |
|
| Q |
398 |
atcaccagataatgtataagatataaaatttgcactttatattattattaattgatttgatgctactagtaagagagagagtgggaaaattaaattagta |
497 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46576141 |
atcaccaaataatgtataagatataaaatttgcactttatattattattaattgatttgatgctactagtaagatagagagtgggaaaattaaattagta |
46576042 |
T |
|
| Q |
498 |
agaatggga |
506 |
Q |
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||||||||| |
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| T |
46576041 |
agaatggga |
46576033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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