View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_1 (Length: 799)
Name: NF17932_low_1
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 336 - 789
Target Start/End: Original strand, 28838577 - 28839029
Alignment:
| Q |
336 |
gttatgattgaatgctgaaataaatgatcgctcattgatttaattattttgcgnnnnnnnnggaacttatgtgtctactgcgaaaggtctgaagttgaac |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
28838577 |
gttatgattgaatgctgaaataaatgatcgctcattgatttaattattttgtgttttttt-ggaacttatgtgtctactgcgaaaggtctgaagttgaac |
28838675 |
T |
|
| Q |
436 |
caatggaaattacacctgctagaaagacacagaaggctgatcgagaaaagttaaggagggatagactcaatgaacagtttttagagctgggtaacatttt |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28838676 |
caatggaaattacacctgctagaaagacacagaaggctgatcgagaaaagttaaggagggatagactcaatgaacagtttttagagctgggtaacatttt |
28838775 |
T |
|
| Q |
536 |
aggtacatgaaacttcactttctaacataggagaataacaataagcgagcattgtcactggttcttgatatattctattctgattttaaactacatgtgg |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28838776 |
aggtacatgaaacttcactttctaacataggagaataacaataagcgagcattgtcactggttcttgatatattctattctgattttaaactacatatgg |
28838875 |
T |
|
| Q |
636 |
ctaatgttacttaagattgcagtcatcgataaattttaccaaacaaattattgcttgttgcttctttagaattcattcatgtgttaggcattttatgctt |
735 |
Q |
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| T |
28838876 |
ctaatgttacttaagattgcagtcatcgataaattttaccaaacaaattattgcttgttgcttctttagaattcattcatgtgttaggcattttatgctt |
28838975 |
T |
|
| Q |
736 |
agaagttagaactgataaaacagaattcctcttaaaataactctgtgctctgtg |
789 |
Q |
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| T |
28838976 |
agaagttagaactgataaaacagaattcctcttaaaataactctgtgctctgtg |
28839029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 28838260 - 28838541
Alignment:
| Q |
23 |
taagttgattcaattcgatttgagtcctgttgagaattgta----tgagtttatcttatcatatgattacaacaatattttaattattttaagctgcaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28838260 |
taagttgattcaattcgatttgagtcctgttgagaattgtatgtatgagtttatcttatcatatgattacaacaatattttacttattttaagctgcaat |
28838359 |
T |
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| Q |
119 |
agacattttcatatattatttaaatagccatgatactatcagattttaacttgagaagttagggtattgttctgtgaaattatataccttcaaatggctt |
218 |
Q |
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| T |
28838360 |
agacattttcatatattatttaaatagcgatgattctatcagattttaacttgagaagttagggtattgttctgtgaaattatataccttcaaatggctt |
28838459 |
T |
|
| Q |
219 |
cataatgtgtaggaaccaattttcaagcggtggcttttggacatgtcaaaggtcactacttgaagagttgaagtaaattata |
300 |
Q |
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| T |
28838460 |
cataatgtgtaggaaccaattttcaagccgtggcttttggacatgtcaaaggtcactgcttgaagagttcaagtaaattata |
28838541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 336 - 675
Target Start/End: Complemental strand, 11685918 - 11685585
Alignment:
| Q |
336 |
gttatgattgaatgctgaaataaatgatcgctcattgatttaattattttgcgnnnnnnnnggaacttatgtgtctactgcgaaaggtctgaagttgaac |
435 |
Q |
| |
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||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||| |
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| T |
11685918 |
gttattattgaaggctgaaataaatgatctttcattgatttaattattttgcgttttt---ggaacttatgtattgactgggaaaggtctgaagttgaac |
11685822 |
T |
|
| Q |
436 |
caatggaaattacacctgctagaaagacacagaaggctgatcgagaaaagttaaggagggatagactcaatgaacagtttttagagctgggtaacatttt |
535 |
Q |
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| T |
11685821 |
caatggaaattacacctgctagaaagacacagaaggctgaccgagaagagttaaggagggatcgactcaataaacaatttttagaggtgggtaacatttt |
11685722 |
T |
|
| Q |
536 |
aggtacatgaaacttcactttctaacataggagaataacaataagcgagcattgtcactggttcttgatatattctattctgattttaaactacatgtgg |
635 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||| |||| |||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
11685721 |
aggtacgtgaaacttcactttctaacataggagaatagcaaaaagtcagcagagtcactaattcttgatatattctattttgattttaaactacatgtgg |
11685622 |
T |
|
| Q |
636 |
ctaatgttacttaagattgcagtcatcgataaattttacc |
675 |
Q |
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| || |||||||||||||||||||| |||||||||||| |
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| T |
11685621 |
caaaggttacttaagattgcagtca---ataaattttacc |
11685585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 11686144 - 11686024
Alignment:
| Q |
56 |
gaattgtatgagtttatcttatcatatgattacaacaatattttaattattttaagctgcaatagacattttcatatattatttaaatagccatgatact |
155 |
Q |
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||||| ||||||||||||||||||||||||| |||||| |||||||| || ||| ||| ||||||||||||| ||||||||||||||||| ||||| || |
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| T |
11686144 |
gaattttatgagtttatcttatcatatgattgcaacaaaattttaatgatcttaggctacaatagacatttt--tatattatttaaatagcgatgattct |
11686047 |
T |
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| Q |
156 |
atcagattttaacttgagaagtt |
178 |
Q |
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||||||||||||||||||||||| |
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| T |
11686046 |
atcagattttaacttgagaagtt |
11686024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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