View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_13 (Length: 371)
Name: NF17932_low_13
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 36603254 - 36603600
Alignment:
| Q |
16 |
gaaagcaagaccagcatccaatgcaccagacaacacataattatgacgctgccaccaatctggtttatacctatacacaacaaacccagacaaaaaacca |
115 |
Q |
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| T |
36603254 |
gaaagcaagaccagcatccaatgcaccagacaacacataattatgacgctgccaccattctggcttatacctatacacaacaaaaccagacaaaaaacca |
36603353 |
T |
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| Q |
116 |
acaatgatccagctagtgtaattcactgctgtagctggtggcatcattccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603354 |
acaatgatccagctagtgtaattcactgctgtagctggtggcatcattccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgtt |
36603453 |
T |
|
| Q |
216 |
gtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggctccacctaggaagaaccaattgatattctcgtaggttcctaagtttccgaagat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36603454 |
gtggaaaggctcttgtagctaaccaaactaacaaaggagcaatggctccacctaggaagaaccaattgatattctcgtaggttcctaagtttccgaagat |
36603553 |
T |
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| Q |
316 |
tcttcttggaccaattaagccccaaa-aactgatgcatcgtagaata |
361 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36603554 |
tcttcttggaccaattaagccccaaataactgatgcatcgtagaata |
36603600 |
T |
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