View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17932_low_16 (Length: 307)

Name: NF17932_low_16
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17932_low_16
NF17932_low_16
[»] chr1 (1 HSPs)
chr1 (1-289)||(44374187-44374475)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 44374475 - 44374187
Alignment:
Q  1 tggattcaggatcaagttgtaaattgcaatgatcaatgaggtatggagattttaatttatgattttcttctgaataatgtatattgtatttgttgtaatc 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44374475 tggattcaggatcaagttgtaaattgcaatggtcaatgaggtatggagattttaatttatgattttcttctgaataatgtatatagtatttgttgtaatc 44374376  T
Q  101 agaggaatttccatgtgcttgaagtccaaacacaagaaatgggatatatagtggttttgcattatattttgttgcagaattagtttaaactcagttttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44374375 agaggaatttccatgtgcttgaagtccaaacacaagaaatgggatatatagtggttttgcattatattttgttgcagaattagtttaaactcagttttta 44374276  T
Q  201 tgctactagtccttactatagtatattgagagagcaagaagcagaaatttttcattactatacttttatgggatcagtcactatctaac 289  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44374275 tgctactagtccttactatagtatattgagagagcaagaagtagaaatttttcattactatacttttatgggatcagtcactatctaac 44374187  T

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