View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17932_low_20 (Length: 254)

Name: NF17932_low_20
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17932_low_20
NF17932_low_20
[»] chr3 (2 HSPs)
chr3 (12-142)||(1480633-1480763)
chr3 (16-61)||(33845005-33845050)
[»] chr6 (2 HSPs)
chr6 (63-138)||(12801189-12801260)
chr6 (12-61)||(3096714-3096765)
[»] chr4 (1 HSPs)
chr4 (12-61)||(39806210-39806259)
[»] chr5 (3 HSPs)
chr5 (17-110)||(24548096-24548200)
chr5 (63-92)||(15811561-15811590)
chr5 (17-57)||(17977633-17977673)
[»] chr8 (2 HSPs)
chr8 (63-93)||(28286740-28286770)
chr8 (12-61)||(5459508-5459559)
[»] chr2 (1 HSPs)
chr2 (16-57)||(21482883-21482924)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 1480763 - 1480633
Alignment:
Q  12 aaaggaacaaaaataatacactaaatctcatttgattaatataattgatataagttgaagcttaaagcttattacatagaattattaaaacacataaagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480763 aaaggaacaaaaataatacactaaatctcatttgattaatataattgatataagttgaagcttaaagcttattacatagaattattaaaacacataaagt 1480664  T
Q  112 ttaaaactaaatctacaacacaagaacttgt 142  Q
    |||||||||||| ||||||||||||||||||    
T  1480663 ttaaaactaaatatacaacacaagaacttgt 1480633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 33845050 - 33845005
Alignment:
Q  16 gaacaaaaataatacactaaatctcatttgattaatataattgata 61  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||    
T  33845050 gaacaaaaataatacacataatctcattttattaatataattgata 33845005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 12801189 - 12801260
Alignment:
Q  63 aagttgaagcttaaagcttattacatagaattattaaaacacataaagtttaaaactaaatctacaacacaagaac 138  Q
    ||||||||||||||||||||||||||| ||||||||||||||     | |||||||||||||| ||||||||||||    
T  12801189 aagttgaagcttaaagcttattacataaaattattaaaacac----cgcttaaaactaaatctgcaacacaagaac 12801260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 3096765 - 3096714
Alignment:
Q  12 aaaggaacaaaaataatacac--taaatctcatttgattaatataattgata 61  Q
    |||||||||||||||||||||   |||||||||||  |||||||||||||||    
T  3096765 aaaggaacaaaaataatacacataaaatctcattttgttaatataattgata 3096714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 39806210 - 39806259
Alignment:
Q  12 aaaggaacaaaaataatacactaaatctcatttgattaatataattgata 61  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  39806210 aaaggaacaaaaataatacgcaaaatctcattttattaatataattgata 39806259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 24548200 - 24548096
Alignment:
Q  17 aacaaaaataatacact--aaatctcatttgattaatataattgatata----------agttgaagcttaaagcttattacatagaattattaaaacac 104  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||| |          ||||||||||||||||||||||||||||| |||| ||||||    
T  24548200 aacaaaaataatacacataaaatctcattttattaatataattgatacatttacaatagagttgaagcttaaagcttattacatagaa-tattcaaacac 24548102  T
Q  105 ataaag 110  Q
     |||||    
T  24548101 ctaaag 24548096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 15811561 - 15811590
Alignment:
Q  63 aagttgaagcttaaagcttattacatagaa 92  Q
    ||||||||||||||||||||||||||||||    
T  15811561 aagttgaagcttaaagcttattacatagaa 15811590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 17977633 - 17977673
Alignment:
Q  17 aacaaaaataatacactaaatctcatttgattaatataatt 57  Q
    |||||||||||||||| ||||||||||| |||||| |||||    
T  17977633 aacaaaaataatacacaaaatctcattttattaatgtaatt 17977673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 28286770 - 28286740
Alignment:
Q  63 aagttgaagcttaaagcttattacatagaat 93  Q
    |||||||||||||||||||||||||||||||    
T  28286770 aagttgaagcttaaagcttattacatagaat 28286740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5459508 - 5459559
Alignment:
Q  12 aaaggaacaaaaataatacact--aaatctcatttgattaatataattgata 61  Q
    |||||||||||||||||| ||   ||||||||||| ||||||||||||||||    
T  5459508 aaaggaacaaaaataatagacataaaatctcattttattaatataattgata 5459559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 21482883 - 21482924
Alignment:
Q  16 gaacaaaaataatacactaaatctcatttgattaatataatt 57  Q
    ||||||||||||||||  ||||||||||| ||||||||||||    
T  21482883 gaacaaaaataatacataaaatctcattttattaatataatt 21482924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University