View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_3 (Length: 655)
Name: NF17932_low_3
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Complemental strand, 39783882 - 39783262
Alignment:
| Q |
13 |
attatactaaaaggaagtagatgccatcattttgtgccaatgtttcaagaatcaattagaccataaatatttatgtgctttcctagaatcaatcctattt |
112 |
Q |
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| T |
39783882 |
attatactaaaaggaagtagatgccatcattttgtgccaatgtttcaagaatcaattagaccataaatatttatgtgctttcctagaatcaatcctattt |
39783783 |
T |
|
| Q |
113 |
tctacataaataactctattctcttagaattttcctcatttaagcttaacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcc |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783782 |
tctatataaataactctattctcttagaattttcctcatttaagcttaacctgtgtatgaaggtaaacttgggacaaagaaggttcaaaactagttagcc |
39783683 |
T |
|
| Q |
213 |
tctatagaaactaaattgatcattcatggagaagcttgttaggtcacgtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaa |
312 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39783682 |
tctatagaaactaaattgatcattgatggagaagcttgttaggtcatgtgacaaagaatacatgaggatggccatgttaaagcatgaagaaactttcaaa |
39783583 |
T |
|
| Q |
313 |
caacaggtacttctatatctattcctccacgttattctttctataagtattagtagttcaaggtatttgatgtctccgttactgatattgaagttgcata |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39783582 |
caacaggtacttctatatctattcctccacgttattctttctataagtattagtagttcaaggtatttgatgtctccattactgatattgaagttgcata |
39783483 |
T |
|
| Q |
413 |
tgtctttgctataacttatactgaccaatgcagcttcaatcatagtcaaaaactcatagacatcnnnnnnnttgatgtcacgaccaatattgaagctgca |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39783482 |
tgtctttgctataacttatactgaccaatgcagcttcaatcatagtcaaaaactcatagacatcaaaaaaattgatgtcacgaccaatattgaagctgca |
39783383 |
T |
|
| Q |
513 |
tcggccatttgatgtctatgcgagtttgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggcaaacatagaacnnnnnnnaaaaccat |
612 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39783382 |
tcggccatttgatgtctatgcgagtctgtgactatgattgaagttgcatcagtcgttcttgaatgcacactggcaaacatagaactttttttaaaaccat |
39783283 |
T |
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| Q |
613 |
acgtcaattgagtgttgcgag |
633 |
Q |
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| T |
39783282 |
acgtcaattgagtgttgcgag |
39783262 |
T |
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