View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17932_low_5 (Length: 521)

Name: NF17932_low_5
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17932_low_5
NF17932_low_5
[»] chr4 (3 HSPs)
chr4 (18-511)||(52350451-52350945)
chr4 (274-413)||(20303938-20304076)
chr4 (285-411)||(20298067-20298193)
[»] chr5 (11 HSPs)
chr5 (123-413)||(30473961-30474255)
chr5 (274-411)||(30481989-30482126)
chr5 (307-411)||(30398671-30398775)
chr5 (274-409)||(30434481-30434616)
chr5 (274-410)||(30339834-30339970)
chr5 (275-413)||(30429526-30429664)
chr5 (274-411)||(30243681-30243818)
chr5 (274-409)||(29870845-29870980)
chr5 (275-413)||(30523010-30523148)
chr5 (275-413)||(30563350-30563488)
chr5 (274-334)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (285-411)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 52350945 - 52350451
Alignment:
Q  18 gtttccattgtcttaccacccttctacttagtgaaggtaacaaaatgacatcctttccagaaggcatgttgagaaacttgacttgtctgcaaactcttat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350945 gtttccattgtcttaccacccttctgcttagtgaaggtaacaaaatgacatcctttccagaaggcatgttgagaaacttgacttgtctgcaaactcttat 52350846  T
Q  118 actaactaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgcaa-tttctcgttgtggtgaccttgagtcttca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52350845 actaactaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgcaaatttctcgttgtggtgaccttgagtcttca 52350746  T
Q  217 ccggagcaaatgttggaaggtcttcaatcccttcaaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcac 316  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350745 ccggagcaaatgttggaaggtcttcaatcccttcgaacaattgaaatatctagttgtggattgagatccttgccagaatgtattcgaaatctcacttcac 52350646  T
Q  317 ttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttgg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350645 ttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatttgg 52350546  T
Q  417 tattgattagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttattacctttgct 511  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350545 tattgaatagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttattacctttgct 52350451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 413
Target Start/End: Original strand, 20303938 - 20304076
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||||||| |||||| ||| ||||||||   |||||||||||||||||  ||| ||||| ||| ||||||||||||||||| || || ||    ||||    
T  20303938 ggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaa 20304037  T
Q  374 caggggaggactatgacaaaatagcgcacattccaaaatt 413  Q
    |||| ||||| |  ||||| |||||||| |||||||||||    
T  20304038 caggcgagga-ttggacaagatagcgcatattccaaaatt 20304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 411
Target Start/End: Original strand, 20298067 - 20298193
Alignment:
Q  285 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 384  Q
    |||||||||| | |||| | | |||||||| |||||| | ||||||||  || ||||||| |||||||||   ||||| || || ||||||||||||||     
T  20298067 cttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggat 20298166  T
Q  385 tatgacaaaatagcgcacattccaaaa 411  Q
    |  ||||| ||||| || |||||||||    
T  20298167 tgggacaagatagctcatattccaaaa 20298193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 123 - 413
Target Start/End: Complemental strand, 30474255 - 30473961
Alignment:
Q  123 ctaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgca-atttctcgttgtggtgaccttgagtcttcaccgga 221  Q
    |||||||||| ||||| ||| ||||||||||||||||||| | ||| |  || ||  |||||   || |||  ||||||||| |||||||||  ||||||    
T  30474255 ctaatttcccaaaattgaagaaactaccaaatgaacccttcaacctagtgttggagtgtctgagtatctcttcttgtggtgagcttgagtctataccgga 30474156  T
Q  222 gcaaatgttggaaggtcttcaatcccttcaaacaattgaaatatctagttgtgga---ttgagatccttgccagaatgtattcgaaatctcacttcactt 318  Q
     ||||  | ||||||||||| ||| |||| ||| ||||| ||   |  |||||||   ||||||||||| || |||| ||||| | | ||||||||||||    
T  30474155 acaaacatgggaaggtcttcgatctcttcgaactattgatattggttattgtggaggattgagatcctttcccgaatctattcaacacctcacttcactt 30474056  T
Q  319 gaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattccaaaatt 413  Q
    ||| |  |||  ||| | | |||||||||||||||||||||||  ||  ||||||| || |||||||  ||||| ||||||||||||||||||||    
T  30474055 gagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactgggacaagatagcgcacattccaaaatt 30473961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 411
Target Start/End: Complemental strand, 30482126 - 30481989
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||||| ||||| ||||| || |||||||||||| |||| ||||| || || ||||    
T  30482126 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaa 30482027  T
Q  374 caggggaggactatgacaaaatagcgcacattccaaaa 411  Q
    || ||||||| |  ||||| ||||| || |||||||||    
T  30482026 catgggaggattgggacaagatagctcatattccaaaa 30481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 30398775 - 30398671
Alignment:
Q  307 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 406  Q
    |||||||| |||||||| ||||| ||   ||||||||||||||||||||| ||||| || || |||||||||||||| |  ||||| ||||| || ||||    
T  30398775 ctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattc 30398676  T
Q  407 caaaa 411  Q
    |||||    
T  30398675 caaaa 30398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 409
Target Start/End: Complemental strand, 30434616 - 30434481
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||| ||||   ||||||||||||||||||||| ||||| || || ||||    
T  30434616 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaa 30434517  T
Q  374 caggggaggactatgacaaaatagcgcacattccaa 409  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  30434516 caggggaggattgggacaagatagctcatattccaa 30434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 410
Target Start/End: Original strand, 30339834 - 30339970
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||||||||   | |||||||||||||| |||| ||||| || || ||||    
T  30339834 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaa 30339933  T
Q  374 caggggaggactatgacaaaatagcgcacattccaaa 410  Q
    |||||||||| |  ||||| ||||| || ||||||||    
T  30339934 caggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 413
Target Start/End: Complemental strand, 30429664 - 30429526
Alignment:
Q  275 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 374  Q
    ||||||||| |||||||||| ||||||   | ||||| ||||||||||| ||| | |||| || ||||||| |  ||| |||||||||||| || ||||     
T  30429664 gattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaat 30429565  T
Q  375 aggggaggactatgacaaaatagcgcacattccaaaatt 413  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  30429564 aggagaggactgggacaagatagaacacattcctaaatt 30429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 411
Target Start/End: Original strand, 30243681 - 30243818
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| ||||||||  ||| ||||| | | || ||||||||| |||| ||||| || || ||||    
T  30243681 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaa 30243780  T
Q  374 caggggaggactatgacaaaatagcgcacattccaaaa 411  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  30243781 caggggaggattgggacaagatagctcatattccaaaa 30243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 409
Target Start/End: Complemental strand, 29870980 - 29870845
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 373  Q
    |||||| ||| |||||| ||  |||||||| | ||||||||||||||| | ||| | |||   | ||||||||||||| |||| ||||| || || ||||    
T  29870980 ggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaa 29870881  T
Q  374 caggggaggactatgacaaaatagcgcacattccaa 409  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  29870880 caggggaggattgggacaagatagctcatattccaa 29870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 30523010 - 30523148
Alignment:
Q  275 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 374  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30523010 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30523109  T
Q  375 aggggaggactatgacaaaatagcgcacattccaaaatt 413  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30523110 aggagaggactgggacatgatagaacacattccaaaatt 30523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 30563350 - 30563488
Alignment:
Q  275 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 374  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30563350 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30563449  T
Q  375 aggggaggactatgacaaaatagcgcacattccaaaatt 413  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30563450 aggagaggactgggacatgatagaacacattccaaaatt 30563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 30395962 - 30395902
Alignment:
Q  274 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactattt 334  Q
    ||||||| |||||||| |||| |||||| |   ||||||||||||||||| ||||||||||    
T  30395962 ggattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactattt 30395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 411
Target Start/End: Complemental strand, 26706046 - 26705920
Alignment:
Q  285 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 384  Q
    |||||||||  |||||||| | |||||||| |||||| | ||||  |||||   ||||||||||||| |||| ||||| || || ||||||||||||||     
T  26706046 cttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggat 26705947  T
Q  385 tatgacaaaatagcgcacattccaaaa 411  Q
    |  ||||| ||||| || |||||||||    
T  26705946 tgggacaagatagctcatattccaaaa 26705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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