View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_6 (Length: 481)
Name: NF17932_low_6
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 23447267 - 23447056
Alignment:
| Q |
18 |
cttggcaaagtgccattaataaagtggattttgttcttggaacatagtgcaaccatgaaggatcgcaatcaagaatgataaattgctccggtttaagggg |
117 |
Q |
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| T |
23447267 |
cttggcaaactgccattaataaagtggattttgttcttggaacataatgca-----------tcgcgatcaagaatgataaattgctccggtttaagggg |
23447179 |
T |
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| Q |
118 |
agagaagcaattacagtacctagattgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagattctaataaccttg |
217 |
Q |
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| T |
23447178 |
agagaagcaattacagtacctagactgttgctctgaacgttttgtatataaccagaatactgacttggtatagaactttccgaagattctaataaccttg |
23447079 |
T |
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| Q |
218 |
ctgttggtggatcctccatggtt |
240 |
Q |
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| T |
23447078 |
ctgttggtggatcctccatggtt |
23447056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 23438122 - 23438004
Alignment:
| Q |
248 |
ttaattaaaccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaata-ttttacctttct |
346 |
Q |
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| T |
23438122 |
ttaattagaccattaatagttgtattacatagttaattttgaccaccatctgtaatttcttctcaagtaattttctcaatgagaatatttttacatttct |
23438023 |
T |
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| Q |
347 |
aatatggtatcagaacata |
365 |
Q |
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| T |
23438022 |
aatatggtattagaacata |
23438004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 23430270 - 23430161
Alignment:
| Q |
257 |
ccattaatagttgtattacagagttaatttttaccaccatctataatttcttctcaagtaattttctcaatgagaata-ttttacctttctaatatggta |
355 |
Q |
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| T |
23430270 |
ccattaatagttttattacagagttaattttgaccactctctgtaatttcttctcaagcaattttcccaaagagaatacttttacatttcaaatatggta |
23430171 |
T |
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| Q |
356 |
tcagaacata |
365 |
Q |
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| T |
23430170 |
ttagaacata |
23430161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 466
Target Start/End: Complemental strand, 23437960 - 23437873
Alignment:
| Q |
381 |
ctaaattctcgactccatggatgattattc--ctt-taaatctgatgtagaatcatcattgattcctgcttctccgcttcgaaaccaac |
466 |
Q |
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| T |
23437960 |
ctaaattcttgactccatg-atgattcttcttcttctaaatttgatgtagaatcatcgtcgtttcctgcttctccgcttcgaaaccaac |
23437873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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