View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_7 (Length: 464)
Name: NF17932_low_7
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_7 |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: scaffold0259 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 2769 - 3207
Alignment:
| Q |
10 |
agagagtggaaaacgttaaataaggctttgtgacctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2769 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
2868 |
T |
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| Q |
110 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgacgtggctttgattgaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2869 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctcgttaactcttgctcaaaggtctacatgcttgtcgtggctttgattgaa |
2968 |
T |
|
| Q |
210 |
tttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2969 |
tttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgattaaatggacatagaaacatatggcacta |
3068 |
T |
|
| Q |
310 |
caaagatctttgagagagatggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069 |
caaagatctttgagagagatggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggttagcaccagaatttaatataaggtgg |
3168 |
T |
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| Q |
410 |
gtttggagagaaaataggatatattagtggtgttagctg |
448 |
Q |
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| T |
3169 |
gtttggagagaaaataggatatattagtggtgttagctg |
3207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 385
Target Start/End: Original strand, 10530387 - 10530777
Alignment:
| Q |
10 |
agagagtggaaaacgttaaataaggctttgtgacctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10530387 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
10530486 |
T |
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| Q |
110 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggt--tctcgttaactcttgctcaaaggtctacatgcttgacgtggctttgattg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
10530487 |
tagagttatctgtttatggtttattttacataaaagtgaaaccatggttctctcgttaactcttgctcaaaggtctacatgcttgtcgtagctttgattg |
10530586 |
T |
|
| Q |
208 |
aatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaataaaaatggcgatt--aaatggacatagaaacatatggc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
10530587 |
aatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaataggaaataaaaatggtgattaaaaatggacatagaaacatatggc |
10530686 |
T |
|
| Q |
306 |
actacaaagatctttgagagag-----------atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
385 |
Q |
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| T |
10530687 |
actacaaagatctttgagagagatggtgtgtatatggttttgttaagcagaccttatgaattgttttccgtctcttcctaattgtgggtta |
10530777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 9818424 - 9818545
Alignment:
| Q |
10 |
agagagtggaaaacgttaaataaggctttgtgacctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9818424 |
agagagtggaaaacgttaaataaggctttgtgatctctttgaaaaataagggagacgtgtaagagtgagatggattcgttcaagagtttattgtggagaa |
9818523 |
T |
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| Q |
110 |
tagagttatctgtttatggttt |
131 |
Q |
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| T |
9818524 |
tagagttatctgtttatggttt |
9818545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 9818544 - 9818657
Alignment:
| Q |
170 |
ttgctcaaaggtctacatgcttgacgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaatagcaaat |
269 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9818544 |
ttgctcaaaggtctacatgcttgtcgtggctttgattgaatttaaaatggcaaggttgagatagaataatgaaacgcatggcccaaaacaaataggaaat |
9818643 |
T |
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| Q |
270 |
aaaaatggcgatta |
283 |
Q |
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|||||||| ||||| |
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| T |
9818644 |
aaaaatggtgatta |
9818657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 9818687 - 9818744
Alignment:
| Q |
328 |
atggttttgttaagcagaccttatgaattgttttcagtctcttcctaattgtgggtta |
385 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9818687 |
atggttttgttaagcagaccttatgaattgttttaagtctcttcctaattgtgggtta |
9818744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 16108408 - 16108445
Alignment:
| Q |
206 |
tgaatttaaaatggcaaggttgagatagaataatgaaa |
243 |
Q |
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| T |
16108408 |
tgaatttaaaatggcaaggttgaaatagaagaatgaaa |
16108445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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