View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17932_low_8 (Length: 454)
Name: NF17932_low_8
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 126 - 436
Target Start/End: Complemental strand, 54237316 - 54236997
Alignment:
| Q |
126 |
gtctattggcataaagatttgaccaaacatatgtgtggaaaaacggagaattatggattcgaatccaacatgcaatgccattttatacaatttggacgct |
225 |
Q |
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| T |
54237316 |
gtctattggcataaagatttgaccaa-catatgtgtggaaaaacggagaattatggattcgaatccgacatgcagtgccattttatacaatttggacgct |
54237218 |
T |
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| Q |
226 |
ctattgtaaatgtctgatttagtcacggttgatcggtaacaaatatataggggtctaaagtctttccccactactaactaagctatacttacacgaccac |
325 |
Q |
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| T |
54237217 |
ctattgtaaatgtctgatttagtcacggttgatcggtaacaaatatataggggtctaaagtctttccccactactaactaagctatacttacactaccac |
54237118 |
T |
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| Q |
326 |
ttgtgcattttttaatctacaatatatttattaatgtcatttctttttatcaat----------ataacatttattaaattagaactccctctattgtct |
415 |
Q |
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| T |
54237117 |
ttgtgcattttttaatctacaatatatttattaatgtcatttctttttatcaatataatataatataacatttattaaattagaactccctctattgtct |
54237018 |
T |
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| Q |
416 |
tctcactcaatgatcacttat |
436 |
Q |
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| T |
54237017 |
tctcactcaatgatcatttat |
54236997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 54237430 - 54237357
Alignment:
| Q |
11 |
catattccaaataaaatgccttcgggttaattccttacttactaataattaacagcacttgtgcatttttcctt |
84 |
Q |
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| T |
54237430 |
catattccaaacaaaatgccttcgggttaattccttacttactaataattaacagcacttgtgcatttttcctt |
54237357 |
T |
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