View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17932_low_9 (Length: 395)
Name: NF17932_low_9
Description: NF17932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17932_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 53 - 377
Target Start/End: Original strand, 51843628 - 51843944
Alignment:
| Q |
53 |
atatcaacaaaatgtgaataatgtagttgtccacattttagaaaagtaacgcaccaactaatccaacatattgactgtaactactaagggactaaatcac |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51843628 |
atatcaacaaaatgtgaataatgtagttgtccacattttaaaaaagtaacgcaccaactaatccaacatattgactgtaactactaagggactaaaccac |
51843727 |
T |
|
| Q |
153 |
ttcacctacatacaatcgattgatataatgtatataaattatcaactatatagaatatagaaattaattatttggcccatcaaaatnnnnnnnnnntcaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51843728 |
ttcacctacatacaatcgattgatataacgtgtatcaattatcaact-------atatagaaattaattatttggcccatcaaaat-aaaaaaaaatcaa |
51843819 |
T |
|
| Q |
253 |
gcttagccactgacactcataataatcttggtttcaatatggattgttttggtggtagaaggaacaacactattgctaatgtagtcttttgcacacataa |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51843820 |
gcttagccactgacactcataataatcttggtttcaatagggattgttttggtggtagaaggaacaacacaattgctaatgtagtcttttgcacacataa |
51843919 |
T |
|
| Q |
353 |
tttttgttgtcaccaagattattgt |
377 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51843920 |
tttttgttgtcaccaagattattgt |
51843944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University