View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17933_high_10 (Length: 337)
Name: NF17933_high_10
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 33499917 - 33499617
Alignment:
| Q |
18 |
atgaagtatgaacctaacagcttacaatataaatgggccctatatcataaataattgataagaatatatttgcctctgataatgttcttgctccaatagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499917 |
atgaagtatgaacctaacagcttacaatataaatgggccctatatcataaataattgataagaatatatttgcctctgataatgttcttgctccaatagt |
33499818 |
T |
|
| Q |
118 |
tgaatgaaaatgcaaaaatggtttatgcatgttgtgtttacactattttgctcctctcttttacatgtccaaagttctcataaagttgatgatgaaatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499817 |
tgaatgaaaatgcaaaaatggtttatgcatgttgtgtttacactattttgcttctctcttttacatgtccaaagttctcataaagttgatgatgaaatca |
33499718 |
T |
|
| Q |
218 |
atagatctcaattcccaaatggtttcctctttggaacaagcacttcctcttaccaagtatacatacacttgttcaacttccttttttcttctgatatatt |
317 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499717 |
atagatctcaattcccaaatggcttcctctttggaacaagcacttcctcttaccaagta----tacacttgttcaacttccttttttcttctgatatatt |
33499622 |
T |
|
| Q |
318 |
ttcat |
322 |
Q |
| |
|
||||| |
|
|
| T |
33499621 |
ttcat |
33499617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 29 - 322
Target Start/End: Original strand, 33517110 - 33517404
Alignment:
| Q |
29 |
acctaacagcttacaatataaatgggccctatatcataaataattgataagaatatatttgcctctgataatgttcttgctcca------atagttgaat |
122 |
Q |
| |
|
|||||||| ||| ||||||| ||||||| ||| |||||||||||||||| |||||||||| ||||||||||||| |||||||| | |||||||| |
|
|
| T |
33517110 |
acctaacaacttgcaatatatatgggccatatgtcataaataattgata-gaatatatttacctctgataatgtgtttgctccacactctacagttgaat |
33517208 |
T |
|
| Q |
123 |
gaaaatgcaaaaatggtttatgcatgttgtgtttacactattttgctcctctcttttacatgtccaaagttctcataaagttgatgatgaaatcaataga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33517209 |
gaaaatgcaaaaatggtttatgcatgttgtgtttacactattttgcttctctcttttacatgtccaaagttctcataaagttgatgatgaaatcaataga |
33517308 |
T |
|
| Q |
223 |
tctcaattcccaaatggtttcctctttggaacaagcacttcctcttaccaagtatacatacacttgttcaacttccttttttcttctgatatattttcat |
322 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33517309 |
tctcaattcccaaatggcttcctctttggaacaagcacttcctcttaccaagt----atacacttgttcaacttccttttttcttctgatatattttcat |
33517404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University