View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17933_high_18 (Length: 251)

Name: NF17933_high_18
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17933_high_18
NF17933_high_18
[»] chr2 (2 HSPs)
chr2 (1-182)||(36582557-36582737)
chr2 (63-164)||(45415349-45415450)
[»] chr3 (3 HSPs)
chr3 (49-140)||(27940545-27940638)
chr3 (61-133)||(44753099-44753171)
chr3 (82-123)||(3192292-3192333)
[»] chr7 (2 HSPs)
chr7 (53-140)||(5972641-5972730)
chr7 (44-174)||(3114840-3114972)
[»] chr8 (4 HSPs)
chr8 (50-116)||(35941218-35941284)
chr8 (44-121)||(35940608-35940685)
chr8 (44-104)||(15293773-15293833)
chr8 (44-104)||(15474142-15474202)
[»] scaffold0051 (1 HSPs)
scaffold0051 (103-164)||(52087-52148)
[»] chr5 (2 HSPs)
chr5 (44-91)||(10069296-10069343)
chr5 (125-172)||(41891557-41891605)
[»] chr4 (2 HSPs)
chr4 (43-104)||(49404080-49404141)
chr4 (44-104)||(47837450-47837510)
[»] chr1 (1 HSPs)
chr1 (43-104)||(39093209-39093270)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 36582737 - 36582557
Alignment:
Q  1 ttgcaattggtccttttgttaagtccatgttnnnnnnnnnggcaaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaag 100  Q
    |||||||||||||||||||||||||||||||          | |||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36582737 ttgcaattggtccttttgttaagtccatgttaaaaaaaaaaggaaaaat-gcggtgtgccacgttgatcaattattacacaccacgtggcacacaaaaag 36582639  T
Q  101 acaattttcaaaattaaaatattgcaaagttttggtattaatccctacactttcaacattttttatattggtcccaaaaccc 182  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  36582638 acaattttcaaaattaaaatattgcaaagttttagtattagtccttacactttcaacattttttatattggtccctaaaccc 36582557  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 45415450 - 45415349
Alignment:
Q  63 gttgatcaatttttacacaccacgtggcacacaaaaagacaattttcaaaattaaaatattgcaaagttttggtattaatccctacactttcaacatttt 162  Q
    ||||| ||||| ||||||  ||| || ||||| |||||| |||||| |||||||||||||| ||||||||| |||||| ||| | ||||||||| |||||    
T  45415450 gttgaccaattattacacgtcacatgacacactaaaagataatttttaaaattaaaatattccaaagttttcgtattagtccatgcactttcaagatttt 45415351  T
Q  163 tt 164  Q
    ||    
T  45415350 tt 45415349  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 27940638 - 27940545
Alignment:
Q  49 taacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa--ttttcaaaattaaaatattgcaaagttttggtatta 140  Q
    ||||||| ||| |||| || ||||  || ||| ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  27940638 taacggtttgctacgtggaccaatcattccacgccacgtggcacactaaaagacaaaattttcaaaattaaaatattgcaaagttttggtatta 27940545  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 44753171 - 44753099
Alignment:
Q  61 acgttgatcaatttttacacaccacgtggcacacaaaaagacaattttcaaaattaaaatattgcaaagtttt 133  Q
    ||||||| ||||| |||||||||||||| ||||| | ||||||||||||| |||||||||||| |||| ||||    
T  44753171 acgttgaccaattattacacaccacgtgacacactacaagacaattttcagaattaaaatattccaaaatttt 44753099  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 3192292 - 3192333
Alignment:
Q  82 ccacgtggcacacaaaaagacaattttcaaaattaaaatatt 123  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  3192292 ccacgcggcacactaaaagacaattttcaaaattaaaatatt 3192333  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 5972730 - 5972641
Alignment:
Q  53 ggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa--ttttcaaaattaaaatattgcaaagttttggtatta 140  Q
    |||||||||||| || ||||  || |||||||| |||||||| |||||||||  ||||||||||||||||||| ||| ||||||||||||    
T  5972730 ggtgtgccacgtggaccaatcatttcacaccacatggcacactaaaagacaaaattttcaaaattaaaatattccaatgttttggtatta 5972641  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 3114840 - 3114972
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa--ttttcaaaattaaaatattgcaaagttttggtattaa 141  Q
    |||| |||| |||||| || | || ||||| ||||||||  |||||||||| |||||||||  |||| | | |||||||||| ||||||||||||||||     
T  3114840 aaaactaacagtgtgctacatggaccaattattacacactccgtggcacactaaaagacaaaatttttagagttaaaatattccaaagttttggtattag 3114939  T
Q  142 tccctacactttcaaca-ttttttatattggtcc 174  Q
    | ||| ||| ||||||| ||||||||||||||||    
T  3114940 ttcctgcac-ttcaacacttttttatattggtcc 3114972  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 35941284 - 35941218
Alignment:
Q  50 aacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaattttcaaaatta 116  Q
    ||||||||||| ||| ||||| || || ||| ||||||||||||||||||||||||||||| |||||    
T  35941284 aacggtgtgccgcgtggatcagttatttcacgccacgtggcacacaaaaagacaattttcataatta 35941218  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 35940608 - 35940685
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaattttcaaaattaaaata 121  Q
    ||||||||| ||||||||||| |||||||| || ||   || ||||||||| ||||||||||||||||||||| ||||    
T  35940608 aaaattaactgtgtgccacgtggatcaattatttcatgacatgtggcacactaaaagacaattttcaaaattagaata 35940685  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 15293833 - 15293773
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa 104  Q
    ||||||||||||||||||||| || || || || |||  |||||||||||| |||||||||    
T  15293833 aaaattaacggtgtgccacgtggaccagttatttcacgtcacgtggcacactaaaagacaa 15293773  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 15474202 - 15474142
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa 104  Q
    ||||||||||||||||||||| || || || || |||  |||||||||||| |||||||||    
T  15474202 aaaattaacggtgtgccacgtggaccagttatttcacgtcacgtggcacactaaaagacaa 15474142  T

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Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 52087 - 52148
Alignment:
Q  103 aattttcaaaattaaaatattgcaaagttttggtattaatccctacactttcaacatttttt 164  Q
    |||||||| ||||||||||||  ||||||||||| ||| |||| |||| |||||||||||||    
T  52087 aattttcagaattaaaatattttaaagttttggtgttagtccccacacattcaacatttttt 52148  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 10069296 - 10069343
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggca 91  Q
    |||||||||||||||| ||||| | ||||| |||||||||||||||||    
T  10069296 aaaattaacggtgtgcaacgttaaccaattattacacaccacgtggca 10069343  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 41891605 - 41891557
Alignment:
Q  125 caaagttttggtattaatccctacactttcaaca-ttttttatattggt 172  Q
    |||| ||||||||||| | ||||||||||||||| ||||||||||||||    
T  41891605 caaaattttggtattagttcctacactttcaacacttttttatattggt 41891557  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 49404141 - 49404080
Alignment:
Q  43 caaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa 104  Q
    ||||| |||||||||||||||| || ||||  || ||| ||||||||||||| |||||||||    
T  49404141 caaaactaacggtgtgccacgtggaccaatcattccacgccacgtggcacactaaaagacaa 49404080  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 47837450 - 47837510
Alignment:
Q  44 aaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa 104  Q
    |||| |||||||| ||||||| || ||||  || ||||||||||||||||| |||||||||    
T  47837450 aaaactaacggtgcgccacgtggaccaataatttcacaccacgtggcacactaaaagacaa 47837510  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 39093209 - 39093270
Alignment:
Q  43 caaaattaacggtgtgccacgttgatcaatttttacacaccacgtggcacacaaaaagacaa 104  Q
    ||||| |||||||||||||||| |||||| | |||||  ||||||| ||||| |||||||||    
T  39093209 caaaactaacggtgtgccacgtggatcaaatattacaggccacgtgacacactaaaagacaa 39093270  T

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