View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_high_19 (Length: 242)
Name: NF17933_high_19
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 510545 - 510724
Alignment:
| Q |
23 |
agcagcagagaatacatatctagtggcatttttaattttgttccatacattttgaaatat----atactgaaggcatgtgcaattttattttattaattt |
118 |
Q |
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| T |
510545 |
agcatcagagaatacatatctagtggcatttttaattttgttccatacattttgaaatatatatatactgaaggcatgtgcaattttattttattaattt |
510644 |
T |
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| Q |
119 |
gaaataatattatagaggaaaggaaaggaaaggaaacatatggaaaaaattgatttagtggtaggaatttaccaaacatat |
199 |
Q |
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| T |
510645 |
gaaataatattatagaggaaaggaaaggaaaggaaacatatgg-aaaaattgatttagtggtaggaatttaccaaacatat |
510724 |
T |
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