View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_high_23 (Length: 226)
Name: NF17933_high_23
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 881137 - 880942
Alignment:
| Q |
13 |
caaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagta |
112 |
Q |
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| T |
881137 |
caaagggaaaaatctttcttgtagtggaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagta |
881038 |
T |
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| Q |
113 |
ttttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacga |
208 |
Q |
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| T |
881037 |
ctttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacga |
880942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 9995110 - 9995068
Alignment:
| Q |
165 |
catcgcgatttgaaaccagaaaatctactcttggatgaaaacg |
207 |
Q |
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| T |
9995110 |
catcgtgatttgaaaccagaaaatcttctgttggatgaaaacg |
9995068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 45268605 - 45268439
Alignment:
| Q |
39 |
gaatatgtaaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttg |
138 |
Q |
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| T |
45268605 |
gaatacgtcaaaggaggtgaacttttcgccaaagtcgccaaaggtaaaatggaagaaaatattgccagaaagtattttcaacaattgatcagtgctgtag |
45268506 |
T |
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| Q |
139 |
atttttgccatagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaa |
205 |
Q |
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| T |
45268505 |
atttctgtcatagtcggggagttacacaccgtgatcttaaacccgagaatcttcttttggatgaaaa |
45268439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 3294244 - 3294132
Alignment:
| Q |
69 |
aaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatc |
168 |
Q |
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|||||||||||||| ||||| || ||||| |||| |||||||| || ||||| || || |||||||| |||| |||||||||| | ||||| | |||| |
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| T |
3294244 |
aaggtagcaaaaggtaaatttaaggaagaacttgcaagaaagtacttccaacagcttataagtgctgtagattattgccatagtagaggtgtttctcatc |
3294145 |
T |
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| Q |
169 |
gcgatttgaaacc |
181 |
Q |
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| T |
3294144 |
gtgatttaaaacc |
3294132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 27006916 - 27006956
Alignment:
| Q |
165 |
catcgcgatttgaaaccagaaaatctactcttggatgaaaa |
205 |
Q |
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| T |
27006916 |
catcgagatttgaaacccgaaaatctactattggatgaaaa |
27006956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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