View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17933_high_4 (Length: 554)
Name: NF17933_high_4
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 49082257 - 49081997
Alignment:
| Q |
19 |
tatatacctttgtagccgcagttgcgaagaagtgcagaaataatgtggcgagtagaatcatcaggttcaacgagtaagaccctaagcatcgtgggaggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082257 |
tatatacctttgtagccgcagttgcgaagaagtgcagaaataatgtggcgagtagaatcatcaggttcaacgagtaagaccctaagcatcgtgggaggaa |
49082158 |
T |
|
| Q |
119 |
caaacttattgttatgatcacccattctttctcaaatgatagtaaattaattgaatggaaaacaaaaaccgcatcaacaaacaagagaacgaaatcgtat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082157 |
caaacttattgttatgatcacccattctttctcaaatgatagtaaattaattgaatggaaaacaaaaaccgcatcaacaaacaagagaacgaaatcgtat |
49082058 |
T |
|
| Q |
219 |
gtatgtatctgttagttagctggagtcttaagtaagtaagttgaatgaatataacaaaatatctg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49082057 |
----gtatctgttagttagctggagtcttaagtaagtaagttgaatgaatataacaaaatatctg |
49081997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 312 - 554
Target Start/End: Complemental strand, 49081983 - 49081741
Alignment:
| Q |
312 |
gtggacgaagaagcaaacaaaagagaatagttttttcaaactactttaaatgcttaatagccgccttacagccacgaaaactaaatatcttattgctttc |
411 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081983 |
gtggaggaagaagaaaacaaaagagaatagttttttcaaactactttaaatgcttaatagccgccttacagccacgaaaactaaatatcttattgctttc |
49081884 |
T |
|
| Q |
412 |
tttgtttttgtggtttcagattcaaccagatctatttctcttctctccgcttccttcattcattcctttgtctttactctttgctcacgtgcctcctttt |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081883 |
tttgtttttgtggtctcagattcaaccagatctatttctcttctctccgcttccttcattcattcctttgtctttactctttgctcacgtgcctcctttt |
49081784 |
T |
|
| Q |
512 |
ccaccatccatttcacccttctgggaccaacacgtgcctctct |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49081783 |
ccaccatccatttcacccttctgggaccaacacgtgcctctct |
49081741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University