View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_high_8 (Length: 360)
Name: NF17933_high_8
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 8943576 - 8943779
Alignment:
| Q |
34 |
atgaaactacaagatcctttatgaaactatttgcaatcattaatgtgtaaaagagtatgttcatgcatattgcataccacaattgatactaaaagcccta |
133 |
Q |
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| T |
8943576 |
atgaaactacaagatcctttatgaaactatttgtaatcattaatgtgtaaaagagtatgttcatgcatattgcataccacaattgatactaacagcccta |
8943675 |
T |
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| Q |
134 |
ccccacataatccatattccatgtttagctctctgcttggttttgttttgtattggtgttggagtaggttttgtattttaagaactctaataatacaaca |
233 |
Q |
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| T |
8943676 |
ccccacataatccatattacatgtttagctctctgcttggttttattttgtattggtgtcggagtaggttttgtattttaagaactctaataatacaaca |
8943775 |
T |
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| Q |
234 |
aagt |
237 |
Q |
| |
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|||| |
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| T |
8943776 |
aagt |
8943779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 8943968 - 8944043
Alignment:
| Q |
271 |
tgttaacaaacactgaggtggtgtggcatcctttgctgttacacagatacggtaacagaagcgtgtacaaattggt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8943968 |
tgttaacaaacactgaggtggtgtggcatcctttgctgttacacagatacggtaacagaagcgtgcacaaattggt |
8944043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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