View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17933_low_1 (Length: 704)
Name: NF17933_low_1
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 26 - 694
Target Start/End: Complemental strand, 34760310 - 34759642
Alignment:
| Q |
26 |
cagaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttgagaagtttga |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760310 |
cagaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttgagaagtttga |
34760211 |
T |
|
| Q |
126 |
cacttattctatgtgttgtgtggcaccagaactagtattaaactaactttacaatgtattctatgtgatatgtatggaaatatattgagctttacaatgt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34760210 |
cacttattctatgtgttgtgtggcaccagaactagtattaaactaactttacaatgtattctatgtgatatgtatggaaatatattgacctttacaatgt |
34760111 |
T |
|
| Q |
226 |
atctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagaggcgaaaatcca |
325 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34760110 |
atctaattgctttcacaggaacttgcattaaaaatggcctccagttccgttgatgcgattggtagacgtaagcataagctttcctagaggcgaaaatcca |
34760011 |
T |
|
| Q |
326 |
gcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttcttttctttctactaagggtgcagtttctacttgtgttttatc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34760010 |
gcaaggatcaagacttgataagcaacctacctgaccacatcattggctgcattctttcttttctttctactaagagtgcagtttctacttgtgttttatc |
34759911 |
T |
|
| Q |
426 |
aaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggaccattcttcgaacaagataagnnnnnnntgctttgcagacttt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
34759910 |
aaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggaccattcttcgaacaagataagaaaaaaatgctttgtagacttt |
34759811 |
T |
|
| Q |
526 |
gtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctttcaatgttagagaaatataattcttcttatattgaaaagtggatat |
625 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34759810 |
gtcgatagggtacttattgatctgaatagtgcgcagatcggaagtttttctctttcaatgttagagaaatataattcttcttatattgaaaagtggatat |
34759711 |
T |
|
| Q |
626 |
ctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaaaaaatatttgcgtcctttg |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34759710 |
ctttggttataaatctgagagtcaaaaatctttgcgtctatttgcaggaaaaaatatttgcgtcctttg |
34759642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 176 - 671
Target Start/End: Complemental strand, 34747726 - 34747228
Alignment:
| Q |
176 |
acaatgtattctatgtgatatgtatggaaatatattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagt |
275 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
34747726 |
acaatgtgctctatgtgacatgaatggaaatatattgagctttacaatgtatctaactgctttcacaggaacttgctgtaaaaatggtctccagttccgt |
34747627 |
T |
|
| Q |
276 |
tgatgtgattggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgc |
375 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||| || || ||| |
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|
| T |
34747626 |
tgatgcgattggtagatgtaagcataagctttctaagaggcaaaaatccaacaagggacaagacttgataagcaacctacctgaccacattattggttgc |
34747527 |
T |
|
| Q |
376 |
attctttcttttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacg |
475 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||| |||| ||| |||| ||||||| | |
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|
| T |
34747526 |
gttctttcttttcttcctactaaggatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttgatg |
34747427 |
T |
|
| Q |
476 |
acat---ggaccattcttcgaacaagataagnnnnnnntgctttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagttt |
572 |
Q |
| |
|
|||| | | |||||| ||| ||||||| ||||||| ||||||||| ||||||||||| ||| |||||||||| || ||| ||||||| |
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|
| T |
34747426 |
acatagggtattgttcttccaacgagataagaaaagcatgctttgtagactttgtagatagggtactgcttcgactgaatagtgaacacatccgaagttt |
34747327 |
T |
|
| Q |
573 |
ttctctttcaatgttagagaaatataattcttcttatattgaaaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgca |
671 |
Q |
| |
|
||||||| ||||| ||||| ||| | ||||| |||||| | ||||||||||| | ||||||||||||||||||| ||| ||| ||||||||||||| |
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|
| T |
34747326 |
ttctcttaaaatgtccgagaagtatgactcttcctatattaacaagtggatatccatcgttataaatctgagagtcagaaagcttcgcgtctatttgca |
34747228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 174 - 478
Target Start/End: Complemental strand, 34756067 - 34755761
Alignment:
| Q |
174 |
ttacaatgtattctatgtgatatgtatg--gaaatatattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagtt |
271 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| | |
|
|
| T |
34756067 |
ttacaatgtattcaatgtgatatatatgtggaaatatatagagctttaaaatgtatctaattgctttcgcaggaacttgctgtaaaaatgacctccatct |
34755968 |
T |
|
| Q |
272 |
cagttgatgtgattggtagacgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcgg |
371 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| ||||| ||||||||||||||||||||||| ||||||||| || || |
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|
| T |
34755967 |
ccgttgatgcgattggtagacgtaagcataagctttctaagaggcaaaattccatcaagggtcaagacttgataagcaacctacctgaccacattattgg |
34755868 |
T |
|
| Q |
372 |
ctgcattctttcttttctttctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaatttt |
471 |
Q |
| |
|
| |||||||| ||||||| ||||||||| |||||| |||| | ||||||||||||| ||||||| |||||||||||||| |||| |||| ||||| |
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|
| T |
34755867 |
ttacattcttttttttcttcctactaaggaagcagttcgtactagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagatttt |
34755768 |
T |
|
| Q |
472 |
gacgaca |
478 |
Q |
| |
|
||||||| |
|
|
| T |
34755767 |
gacgaca |
34755761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 191 - 485
Target Start/End: Complemental strand, 34743147 - 34742853
Alignment:
| Q |
191 |
tgatatgtatggaaatatattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtag |
290 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||| | ||||| ||||||| | | ||||| |
|
|
| T |
34743147 |
tgatatgtttgcaaatatatagagctttacaatgtatctaattattttcataggaacttgctgcaaaaatggacaatagttctgttgatgagttgggtag |
34743048 |
T |
|
| Q |
291 |
acgtaagcataagctttccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttcttttctt |
390 |
Q |
| |
|
|||||||| ||||||||| |||| || |||||||||||| | | ||||||||||||||||||||| ||||||||| || || |||||||||||||||||| |
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|
| T |
34743047 |
acgtaagcgtaagctttctaagatgcaaaaatccagcaaaggttaagacttgataagcaacctacctgaccacattattggttgcattctttcttttctt |
34742948 |
T |
|
| Q |
391 |
tctactaagggtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca |
485 |
Q |
| |
|
|| ||||| ||| ||| ||| | ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34742947 |
catattaaggaagcaatttgtaccagcgttttatcaaagaggtggatatccctctggaaaattatcacccgactaaattttgacgacatggacca |
34742853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 217 - 579
Target Start/End: Complemental strand, 34752304 - 34751954
Alignment:
| Q |
217 |
ttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagaggc |
316 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34752304 |
ttacaatgtatttaattgctttcacaggaacttgctgtaaaaatggcctccagttccgttgatgcgattgatagacgtaagcataagctt---------- |
34752215 |
T |
|
| Q |
317 |
gaaaatccagcaaggatcaagacttgataagcaacctacttgaccacatcatcggctgcattctttcttttctttctactaagggtgcagtttctacttg |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || || | |||||||| ||||||||||||||||| |||||| ||| | |
|
|
| T |
34752214 |
-----tccagcaagggtcaagacttgataagcaacctaccagaccacattattggttacattctttattttctttctactaaggaagcagttcgtaccag |
34752120 |
T |
|
| Q |
417 |
tgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggacca---ttcttcgaacaagataagnnnnnnntgc |
513 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||| |||| |||||||||||| | |||| ||||| |||||||||||| || |
|
|
| T |
34752119 |
cgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgacaagaaccatttttctttgaacaagataagaaaaaaaggc |
34752020 |
T |
|
| Q |
514 |
tttgcagactttgtcgatagggtacttcttgatctgaatagtgcgcaaatcggaagtttttctctt |
579 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| ||||||||||||| || ||| ||||||||||||| |
|
|
| T |
34752019 |
tttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctctt |
34751954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 34747852 - 34747726
Alignment:
| Q |
27 |
agaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttgagaagtttgac |
126 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
34747852 |
agaatgaactaaacgggcacattaacgagtttctttattcagttaagcaaattgggaagatttatattagtttttgttcctaattgttgagaagtttgac |
34747753 |
T |
|
| Q |
127 |
acttattctatgtgttgtgtggcacca |
153 |
Q |
| |
|
||||||||| ||| ||||||||||||| |
|
|
| T |
34747752 |
acttattctgtgttttgtgtggcacca |
34747726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 34752451 - 34752331
Alignment:
| Q |
27 |
agaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttgagaagtttgac |
126 |
Q |
| |
|
||||||||| ||| ||||||||||| | |||||||| |||||||||| | |||| |||||||| |||| ||| ||| ||| ||||||||||||||||| |
|
|
| T |
34752451 |
agaatgaactaattgggcacattaatgggtttctatttttggttaagcagattgagaagatttgcattaatttttgttcctaattgttgagaagtttgag |
34752352 |
T |
|
| Q |
127 |
acttattctatgtgttgtgtg |
147 |
Q |
| |
|
| ||||||| | ||||||||| |
|
|
| T |
34752351 |
atttattctttttgttgtgtg |
34752331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 34751902 - 34751849
Alignment:
| Q |
616 |
aagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttg |
669 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
34751902 |
aagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttg |
34751849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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