View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_13 (Length: 303)
Name: NF17933_low_13
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_13 |
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| [»] scaffold1995 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 38546331 - 38546045
Alignment:
| Q |
1 |
aaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacatatttcttatatatttaatttaatacatgcatgagggaataacattta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546331 |
aaattgatcaagtgaagttgatatatttagttcaaattttggactaaatacatatttcttatatatttaatttaatacatgcatgagggaataacattta |
38546232 |
T |
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| Q |
101 |
ctcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatccaattcgcgtgttcgctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546231 |
ctcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatccaattcgcgtgttcgctcc |
38546132 |
T |
|
| Q |
201 |
aatatttatctggccatcgagatttcttaaagaaatctgggacgttaacatttgctgtggcgtaaaggtagcgtgtaacgtcatacc |
287 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38546131 |
aatatttatctggccatcgagatttcttgaagaaatctgggacgttaacatttgctgtggcgtagaggtagcgtgtaacgtcatacc |
38546045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 82 - 287
Target Start/End: Complemental strand, 38552649 - 38552444
Alignment:
| Q |
82 |
catgagggaataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatc |
181 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
38552649 |
catgagggagtaacatttactcataagtacatttgtaaacgttaatcacacacctatttgttttgttgtttcatcgtttgaaacggctatgtatcccatc |
38552550 |
T |
|
| Q |
182 |
caattcgcgtgttcgctccaatatttatctggccatcgagatttcttaaagaaatctgggacgttaacatttgctgtggcgtaaaggtagcgtgtaacgt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38552549 |
caattcgcgtgttcgctccaatatttatctggccatcgagatttcttgaagaaatctgggacgttaacatttgctgtggcgtagaggtagcgtgtaacgt |
38552450 |
T |
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| Q |
282 |
catacc |
287 |
Q |
| |
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|||||| |
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| T |
38552449 |
catacc |
38552444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38552735 - 38552686
Alignment:
| Q |
1 |
aaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacat |
53 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
38552735 |
aaattgatcaagtgaagttgatatatttagtt---attttggactaaatacat |
38552686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1995 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 82 - 287
Target Start/End: Complemental strand, 312 - 107
Alignment:
| Q |
82 |
catgagggaataacatttactcaaaagtacatttgtaaacgttaatcacacacctatttgttttgttgcttcatcgtttgaaacagctatgtatcccatc |
181 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
312 |
catgagggagtaacatttactcataagtacatttgtaaacgttaatcacacacctatttgttttgttgtttcatcgtttgaaacggctatgtatcccatc |
213 |
T |
|
| Q |
182 |
caattcgcgtgttcgctccaatatttatctggccatcgagatttcttaaagaaatctgggacgttaacatttgctgtggcgtaaaggtagcgtgtaacgt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
212 |
caattcgcgtgttcgctccaatatttatctggccatcgagatttcttgaagaaatctgggacgttaacatttgctgtggcgtagaggtagcgtgtaacgt |
113 |
T |
|
| Q |
282 |
catacc |
287 |
Q |
| |
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|||||| |
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|
| T |
112 |
catacc |
107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1995; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 398 - 349
Alignment:
| Q |
1 |
aaattgatcaagtgaagttgatatgtttagttcaaattttggactaaatacat |
53 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
398 |
aaattgatcaagtgaagttgatatatttagtt---attttggactaaatacat |
349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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