View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17933_low_15 (Length: 289)
Name: NF17933_low_15
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 32269761 - 32269940
Alignment:
| Q |
26 |
acatgacatttgcagtagaccacattccatgtttacaaattatatccgcat--gaaatctccacactcaatcataccgatccaacggccacaatctcact |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
32269761 |
acatgacatttgcagtagaccacattccatgattacaaattatatccccatatgaaatctccacactcaatcacactgatccaacggccaaaatctcact |
32269860 |
T |
|
| Q |
124 |
gaaatcacaaaacaacatgaggcaatgcaaatgcttatgatctataacaactataaaataggaatgatagttatactaaa |
203 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
32269861 |
aaaatcacaaaacaatatgaagcaatgcaaatgcttatgatctataacaactataaaatagcaatggtagttatactaaa |
32269940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 32809840 - 32809908
Alignment:
| Q |
102 |
atccaacggccacaatctcactgaaatcacaaaacaacatgaggcaatgcaaatgcttatgatctataa |
170 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32809840 |
atccaacggccacaagttcactcgaatcgcaaaacaacatgaggcaaagcaaatgcttatgatctataa |
32809908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 32270283 - 32270316
Alignment:
| Q |
247 |
tttcaatataagtcgtcctttctcctatgctact |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32270283 |
tttcaatataagtcgtcctttctcctatgctact |
32270316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University