View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_17 (Length: 267)
Name: NF17933_low_17
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_17 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 26651808 - 26651614
Alignment:
| Q |
1 |
tttcgttcaatgtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaac |
100 |
Q |
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| T |
26651808 |
tttcgttcaatgtcaaatatgtgccaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaataac |
26651709 |
T |
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| Q |
101 |
ttaaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc |
195 |
Q |
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| T |
26651708 |
ttaaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc |
26651614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 26757776 - 26757582
Alignment:
| Q |
1 |
tttcgttcaatgtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26757776 |
tttcgttcaatgtcaaatatgtgccaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaataac |
26757677 |
T |
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| Q |
101 |
ttaaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc |
195 |
Q |
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| T |
26757676 |
ttaaaatatggaaagtatgggtagtggattttggtctttggtctttggtttttagttcattcggtgaaagtggattttggcctcttaggaggttc |
26757582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 27421770 - 27421882
Alignment:
| Q |
12 |
gtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaacttaaaatatgg |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | ||| | ||||||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
27421770 |
gtcaaatatgtgctaaggtttttgaagttgatcatatgaatattcaattatatcttctaataatttctgtgattatatattgtaattacttagaatatgg |
27421869 |
T |
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| Q |
112 |
aaagtatgggtag |
124 |
Q |
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| T |
27421870 |
aaagtatgggtag |
27421882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 65593 - 65481
Alignment:
| Q |
12 |
gtcaaatatgtgctaaggtttttgaagttgatcatctgaatattaatttacagcttctaatattttctgtgattatatattgtaacaacttaaaatatgg |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| | ||| | ||||||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
65593 |
gtcaaatatgtgctaaggtttttgaagttgatcatatgaatattcaattatatcttctaataatttctgtgattatatattgtaattacttagaatatgg |
65494 |
T |
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| Q |
112 |
aaagtatgggtag |
124 |
Q |
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||||||||||||| |
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| T |
65493 |
aaagtatgggtag |
65481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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