View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_18 (Length: 256)
Name: NF17933_low_18
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 32615729 - 32615955
Alignment:
| Q |
18 |
caccagaaatatcatcttttggcgcaataacatacgcaataatgtagggacatttttgtgtgtttaaatcatcgactcttttaggcctatgatccgtgaa |
117 |
Q |
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| T |
32615729 |
caccagaaatatcatcttttggcgcaataacatacgcaataatgtagggacatctttgcgttttcaaatcattgactcttttaggcctatgatccgtgaa |
32615828 |
T |
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| Q |
118 |
agcaatgagatctccaggttctggttcatattttcgaacaccattttccacttcattagttatactcttcaatgatatctgatagaacaaagatttcgga |
217 |
Q |
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| T |
32615829 |
agcaatgagatctccaggttctggttcatattttcgaacaccattttccacttcattagttatactcttcaatgatatctgatagaacaaagatttcgga |
32615928 |
T |
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| Q |
218 |
agcttgaattccttgctttctctttca |
244 |
Q |
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| T |
32615929 |
agcttgaattccttgctttctctttca |
32615955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 35163702 - 35163826
Alignment:
| Q |
28 |
atcatcttttggcgcaataacatacgcaataatgtagggacatttttgtgtgtttaaatcatcgactcttttaggcctatgatccgtgaaagcaatgaga |
127 |
Q |
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| T |
35163702 |
atcatattttggcacaataaccaaagcaatattatacggacatctctgtgtgttcaagtcatcaactcttttaggcctaacgtctgtgaacgcaataaca |
35163801 |
T |
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| Q |
128 |
tctccaggttctggttcatattttc |
152 |
Q |
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| T |
35163802 |
tctccatgttctggttcatattttc |
35163826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 26377051 - 26376993
Alignment:
| Q |
92 |
actcttttaggcctatgatccgtgaaagcaatgagatctccaggttctggttcatattt |
150 |
Q |
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| T |
26377051 |
actctcttaggcttaatatctgtgaaagcaatgagatatccaggttctggttcatattt |
26376993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 22693207 - 22693143
Alignment:
| Q |
180 |
tactcttcaatgatatctgatagaacaaagatttcggaagcttgaattccttgctttctctttca |
244 |
Q |
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| T |
22693207 |
tactcttgaatgatatttgatagaacaaggattttggaagtttgaattgcttgttgtctctttca |
22693143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 22693262 - 22693225
Alignment:
| Q |
113 |
gtgaaagcaatgagatctccaggttctggttcatattt |
150 |
Q |
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| T |
22693262 |
gtgaaagcaatgagatatccaggttctggttcgtattt |
22693225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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