View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17933_low_2 (Length: 689)

Name: NF17933_low_2
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17933_low_2
NF17933_low_2
[»] chr3 (4 HSPs)
chr3 (126-496)||(30545-30934)
chr3 (576-674)||(31014-31110)
chr3 (18-51)||(28895-28928)
chr3 (408-478)||(13800007-13800077)
[»] chr7 (1 HSPs)
chr7 (390-457)||(34838433-34838500)
[»] chr5 (3 HSPs)
chr5 (407-478)||(6462366-6462437)
chr5 (408-478)||(17259486-17259556)
chr5 (390-438)||(25618295-25618343)
[»] chr6 (1 HSPs)
chr6 (445-478)||(2046144-2046177)
[»] chr2 (2 HSPs)
chr2 (390-438)||(12359870-12359918)
chr2 (420-478)||(27679120-27679178)
[»] chr1 (1 HSPs)
chr1 (410-480)||(38785800-38785870)
[»] chr8 (2 HSPs)
chr8 (422-478)||(24523798-24523855)
chr8 (390-478)||(38288851-38288938)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 126 - 496
Target Start/End: Original strand, 30545 - 30934
Alignment:
Q  126 atgaaagataaagttgtcataa--tagttgtacaaatatcannnnnnnattaaaaaatataactgtcatattttcagaagtttataacttattttttg-- 221  Q
    |||||| |||||||||||| ||  |||||||| ||||||||       |||||||||||||||||||||||||||| ||||||||||||||||||| |      
T  30545 atgaaatataaagttgtcacaaaatagttgtaaaaatatcatttttatattaaaaaatataactgtcatattttcacaagtttataacttatttttagag 30644  T
Q  222 taataatatttgtagaatcatttggtgacatcttttgtgataacnnnnnnnnnnnnnnnnnnnattgataaaaaacaacatagtagaaaaaagaagagag 321  Q
    |||| ||||||||| |||||||||||||||||||||||||||||                   ||||||||||||||| |||||||||||||||||||||    
T  30645 taatgatatttgtacaatcatttggtgacatcttttgtgataaccttttttatctttttttt-attgataaaaaacaatatagtagaaaaaagaagagag 30743  T
Q  322 agagtgagaacataatgtgact--------------tgttcaaaagtagacacag--tggtattacaaatatcatttttctatatttattagtttataac 405  Q
    ||||||||| |||||||||| |              |||||||||||||||| |   |||| ||||||||||||||||||||||||||||||||||||||    
T  30744 agagtgagagcataatgtgagtataaaagataaaattgttcaaaagtagacataaaatggttttacaaatatcatttttctatatttattagtttataac 30843  T
Q  406 agtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttactcttagtaactttaattg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  30844 agtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattatttatctcaattttactattagtaactttaattg 30934  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 576 - 674
Target Start/End: Original strand, 31014 - 31110
Alignment:
Q  576 aaatactactaattcatcaactaactaattaatcgatataagttgtccactacacgttcatccactatataagttagtttgttaactattcgctatttt 674  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31014 aaatactacaaattcatcaactaactaattaatcgatataagttgtccactacacgttcatccac--tataagttagtttgttaactattcgctatttt 31110  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 28895 - 28928
Alignment:
Q  18 attatgtttataagctcatatgatatcaaaagag 51  Q
    ||||||||||||||||||||||||||||||||||    
T  28895 attatgtttataagctcatatgatatcaaaagag 28928  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 478
Target Start/End: Complemental strand, 13800077 - 13800007
Alignment:
Q  408 tttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 478  Q
    ||||| |||| ||||||||||||| ||| | | |||||||||||| |||||| | || |||||||||||||    
T  13800077 tttttcataagttaattcaagtaggttacagagtaaagtttatagcttatcactttttatctcaattttac 13800007  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 390 - 457
Target Start/End: Complemental strand, 34838500 - 34838433
Alignment:
Q  390 tttattagtttataacagtttttgataaattaattcaagtagtttataaattaaagtttatagtttat 457  Q
    ||||| ||||||| || |||||||||||||||||||||||||||| ||| | ||||||||||| ||||    
T  34838500 tttataagtttatgacggtttttgataaattaattcaagtagtttgtaactaaaagtttatagcttat 34838433  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 6462437 - 6462366
Alignment:
Q  407 gtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 478  Q
    |||||||||||  |||||||||||| |||||  |||||| |||||| ||||||||||| |||||||||||||    
T  6462437 gtttttgataagctaattcaagtagcttatatcttaaagcttatagcttatcattatttatctcaattttac 6462366  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 478
Target Start/End: Original strand, 17259486 - 17259556
Alignment:
Q  408 tttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 478  Q
    ||||| |||| ||||||||||||| |||||  ||||||||||||  |||||||| |||||||||| |||||    
T  17259486 ttttttataagttaattcaagtagattatagcttaaagtttataacttatcatttttcatctcaaatttac 17259556  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 25618295 - 25618343
Alignment:
Q  390 tttattagtttataacagtttttgataaattaattcaagtagtttataa 438  Q
    |||||||||||| | |||||||||| || |||||||||||| |||||||    
T  25618295 tttattagtttagagcagtttttgaaaagttaattcaagtaatttataa 25618343  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 2046177 - 2046144
Alignment:
Q  445 gtttatagtttatcattattcatctcaattttac 478  Q
    ||||||||||||||||||||||||||||||||||    
T  2046177 gtttatagtttatcattattcatctcaattttac 2046144  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 12359918 - 12359870
Alignment:
Q  390 tttattagtttataacagtttttgataaattaattcaagtagtttataa 438  Q
    |||| ||| |||||||| |||||||||| ||||||||||||||||||||    
T  12359918 tttactagcttataacattttttgataagttaattcaagtagtttataa 12359870  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 27679120 - 27679178
Alignment:
Q  420 taattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 478  Q
    |||||||||||| ||||   |||||| |||||| ||||||||||| |||||||||||||    
T  27679120 taattcaagtagcttatggcttaaagcttatagcttatcattatttatctcaattttac 27679178  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 38785800 - 38785870
Alignment:
Q  410 tttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttactc 480  Q
    ||||||||  |||||||| ||| |||||| ||||||||| || ||||||||| | | ||||||||||||||    
T  38785800 tttgataagctaattcaaatagcttataacttaaagtttgtaatttatcattttgcctctcaattttactc 38785870  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 24523855 - 24523798
Alignment:
Q  422 attcaagtagtttataaattaaagtttatagtttatcatt-attcatctcaattttac 478  Q
    |||||||||| |||||  |||||||||||||||||||||| ||| ||||||| |||||    
T  24523855 attcaagtagcttatagcttaaagtttatagtttatcattaatttatctcaagtttac 24523798  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 38288938 - 38288851
Alignment:
Q  390 tttattagtttataacagtttttgataaattaattcaagtagtttataaattaaagtttatagtttatcattattcatctcaattttac 478  Q
    ||||| || ||||||| |||| ||||||  |||||||||||| |||||| |||||| |||||  |||| ||| || |||||||||||||    
T  38288938 tttataagcttataactgtttgtgataagctaattcaagtagattataatttaaagcttataacttattatt-tttatctcaattttac 38288851  T

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