View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_22 (Length: 238)
Name: NF17933_low_22
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 50 - 225
Target Start/End: Original strand, 39747423 - 39747598
Alignment:
| Q |
50 |
aaagaatcattctacatgaaaataaacagcattacattactccccctctattatcatgcctcctatattatagttgtgttggttttcttcttctacaaaa |
149 |
Q |
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| T |
39747423 |
aaagaatcattctacatgaaaataaacagcattacattactccccctctattatcatgcctcctatattatagttgtgttggttttcttcttctacaaaa |
39747522 |
T |
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| Q |
150 |
ctgtaaaaagagtcgttgaggccagattatccactcttggtggctttgacaaattctgacattcctagactctgtg |
225 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39747523 |
ctgtaaaaagagtcgtcgaggccaaattatccactcttggtggctttgacaaattctgacattcctagactctgtg |
39747598 |
T |
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