View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_26 (Length: 226)
Name: NF17933_low_26
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 43183868 - 43184057
Alignment:
| Q |
20 |
tcacagctgagagtactgcaaa-gcttccccctcatgaactaacagtttcggagtcacgaacaaaagctttcccacccagcaaaagctgtaacaaactgt |
118 |
Q |
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| T |
43183868 |
tcacagctgagagtactgcaaaagcttccccctcatgaactaacagtttcggagtcacgaataaaagctttccaacccagcaaaagctgtaacaaactgt |
43183967 |
T |
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| Q |
119 |
ctgaaggagtcacgaatgaagcacctgaaacctgtctttgttagcagactgctaaagcttgcattcacattacatttcagaacacctata |
208 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43183968 |
ctgaaggagtcacgaacgaagcacctgaagcctgtctttgttagcagactgctaaagcttgcattcacattacatttcagaacacctata |
43184057 |
T |
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