View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_27 (Length: 210)
Name: NF17933_low_27
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 13688772 - 13688588
Alignment:
| Q |
19 |
acattgcacgcctactttagctgtgcttcctgctgaaattgcagtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcg |
118 |
Q |
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| T |
13688772 |
acattgcacgcctactttagctgtgcttcctgctgaaattgcagtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcg |
13688673 |
T |
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| Q |
119 |
gttgtatatatacattggattgttgcatttccacttattattacttaattttgtacagccatttccaccagtctctgctcctcct |
203 |
Q |
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| T |
13688672 |
gttgtatatatacattggattgttgcatttccacttattattacttaattttgtacagccatttccaccagtccctgctgctcct |
13688588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 13633379 - 13633253
Alignment:
| Q |
62 |
gtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcggttgtatatatacattggattgttgcatttccacttattatta |
161 |
Q |
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| T |
13633379 |
gtatgaacttagtttttctatttgttttcatgttcattgataaaataattatttcatgtttt-tctatacattggatttttgcatttccatttattattg |
13633281 |
T |
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| Q |
162 |
cttaattttgtacagccatttccaccag |
189 |
Q |
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| T |
13633280 |
cttaattttgtgcagccacttcccccag |
13633253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 27533776 - 27533906
Alignment:
| Q |
62 |
gtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcggttgtatatatacattggattgttgcatttccacttattatta |
161 |
Q |
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| T |
27533776 |
gtatgaacttagttttgctatttgttttcatgttcatcaataaaataattatttcatgttgtttat----attggattgttgcatatccacttattatta |
27533871 |
T |
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| Q |
162 |
cttaattttgtacagccatttccaccagtctctgc |
196 |
Q |
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| T |
27533872 |
cttaattttgtgcagccacttcccccagcctctgc |
27533906 |
T |
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