View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_28 (Length: 203)
Name: NF17933_low_28
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 42789048 - 42788880
Alignment:
| Q |
16 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaagga |
115 |
Q |
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| T |
42789048 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaagga |
42788949 |
T |
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| Q |
116 |
gtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctcc |
184 |
Q |
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| T |
42788948 |
gtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctcc |
42788880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 42798586 - 42798418
Alignment:
| Q |
16 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaagga |
115 |
Q |
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| T |
42798586 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtccacttttgaagga |
42798487 |
T |
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| Q |
116 |
gtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctcc |
184 |
Q |
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| T |
42798486 |
gtcaactaaggaaggtgaattggaactttggaatattgttttgaatgaactgaaattgaatatatctcc |
42798418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 34566721 - 34566633
Alignment:
| Q |
16 |
atgaaatgataattgaaggtttgaaaagtgttggaattgagtgtttgaaagggaatgcaggtttgttttgttggatgaatttgagtcca |
104 |
Q |
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| T |
34566721 |
atgaaatgatcattgaaggtttgaaaagtgctggaattgaatgcttgaaaggtaatgcagggttgttttgttggatgaatatgagtcca |
34566633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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