View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_3 (Length: 596)
Name: NF17933_low_3
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 47158554 - 47159147
Alignment:
| Q |
1 |
aaaatacaaaatcttagaaatcgtattttaattaatgtcctaaactttgtttttacatgtaatgctggggtccttatagaattttttaaaataagctggt |
100 |
Q |
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| T |
47158554 |
aaaatacaaaatcttagaaaccgtattttaattaatgtcctaaactttgtttttacatgtaatgctggggtccttatagaattttttaaaataagctggt |
47158653 |
T |
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| Q |
101 |
ggagataacaagaacccggaaaaatattatactactagcttcttttagaggcaaaataaaaatattatcgtgagtcagttgaaagattttgaaacatcac |
200 |
Q |
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| T |
47158654 |
ggagataacaagaacccggaaaaatattatactactagcttcttttagaggcaaaataaaaatattatcttgagtcagttgaaagattttgaaacatcac |
47158753 |
T |
|
| Q |
201 |
gtacttcttcatgactgtgttcgttttcaattgggacgatgtccaattattaaagcaacaaacttaacgctttccattaattaaatcacaactactccct |
300 |
Q |
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| T |
47158754 |
gtacttcttcatgactgtgttcgtgttcaattgggacgatgtccaattattaaagcaacaaacttaacgctttccattaattaaatcacaactaccccct |
47158853 |
T |
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| Q |
301 |
gttacttaaaaatacacgtggcaccaccaattttgcttttgatttattgatttgagtcggttggaatatattttgcaattctaaggaggctttttactag |
400 |
Q |
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| T |
47158854 |
gttacttaaaaatacacatggcaccaccaattttgcttttgatttattgatttgagtcggttggaatatattttgcaattctaaggaggctttttactag |
47158953 |
T |
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| Q |
401 |
aggaaaatactagtactagtgttgaggagtgtcgggagcgttccgagcggtaacaagctaagtgtttaggatttattaaaagaaaggcgtcacattctta |
500 |
Q |
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| T |
47158954 |
agcaaaatactagtactggtgttgaggagtgtcgggagcgctccgagcggtaacaagctaagtgtttaggatttattaaaagagaggcgtcacattctta |
47159053 |
T |
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| Q |
501 |
cccacatattttcaacattctcctcttttatgtatcaaacgtttcttcaattttcagtcgatgtgagacataatcagttacgcttaatttccaa |
594 |
Q |
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| T |
47159054 |
cccatacatttccaatattctcctcttttatgtatcaaacgtttcttcaatttccagtcgatgtgagatataatcacttacgattaatttccaa |
47159147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 519 - 576
Target Start/End: Original strand, 35448705 - 35448762
Alignment:
| Q |
519 |
tctcctcttttatgtatcaaacgtttcttcaattttcagtcgatgtgagacataatca |
576 |
Q |
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| T |
35448705 |
tctcctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatca |
35448762 |
T |
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