View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17933_low_5 (Length: 446)
Name: NF17933_low_5
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17933_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 42789031 - 42789476
Alignment:
| Q |
1 |
cttcaattatcatttcatatctcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789031 |
cttcaattatcatttcatatctcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattg |
42789130 |
T |
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| Q |
101 |
ctgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42789131 |
ttgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggt |
42789230 |
T |
|
| Q |
201 |
agaccgagatcttttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagagg |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42789231 |
agaccgagatcttttgagagactatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagagg |
42789330 |
T |
|
| Q |
301 |
aattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42789331 |
aattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgt |
42789430 |
T |
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| Q |
401 |
tatacctaacgggtttgaagggtttgtgatcagcactccactcact |
446 |
Q |
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| T |
42789431 |
tatacctaatgggtttgaagggtttgtgatcagcactccactcact |
42789476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 42798569 - 42799014
Alignment:
| Q |
1 |
cttcaattatcatttcatatctcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798569 |
cttcaattatcatttcatatctcttcttcaatctttccctattaatgttaatatacttctcagtaaactttttgtctgatagcatattagccaaaaattg |
42798668 |
T |
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| Q |
101 |
ctgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggt |
200 |
Q |
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| T |
42798669 |
ttgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggt |
42798768 |
T |
|
| Q |
201 |
agaccgagatcttttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagagg |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42798769 |
agaccgagatcttttgagagactatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagagg |
42798868 |
T |
|
| Q |
301 |
aattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42798869 |
aattaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgt |
42798968 |
T |
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| Q |
401 |
tatacctaacgggtttgaagggtttgtgatcagcactccactcact |
446 |
Q |
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| T |
42798969 |
tatacctaatgggtttgaagggtttgtgatcagcactccactcact |
42799014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 102 - 393
Target Start/End: Original strand, 34566805 - 34567096
Alignment:
| Q |
102 |
tgtgtttgtgaagatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggta |
201 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
34566805 |
tgtgtttgtgaagatattaaggtaaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggta |
34566904 |
T |
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| Q |
202 |
gaccgagatcttttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagagga |
301 |
Q |
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||||||||||||| || |||||||||||||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| || |
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| T |
34566905 |
gaccgagatctttagaaagactataaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtga |
34567004 |
T |
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| Q |
302 |
attaaacactgatcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtt |
393 |
Q |
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| || ||||| || ||||||||||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| |
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| T |
34567005 |
agagaaaactgagcccgagtagatttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgtt |
34567096 |
T |
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