View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17933_low_9 (Length: 343)

Name: NF17933_low_9
Description: NF17933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17933_low_9
NF17933_low_9
[»] chr1 (8 HSPs)
chr1 (18-329)||(47159126-47159436)
chr1 (118-280)||(34666002-34666166)
chr1 (197-315)||(31973493-31973611)
chr1 (207-294)||(43834387-43834474)
chr1 (193-278)||(4753119-4753203)
chr1 (116-145)||(44043811-44043840)
chr1 (118-146)||(14318959-14318987)
chr1 (118-146)||(32594754-32594782)
[»] chr7 (5 HSPs)
chr7 (190-294)||(21416320-21416423)
chr7 (155-281)||(23568903-23569029)
chr7 (190-294)||(27597859-27597964)
chr7 (27-100)||(27938752-27938824)
chr7 (116-145)||(45433331-45433360)
[»] chr6 (6 HSPs)
chr6 (197-291)||(7301482-7301576)
chr6 (239-337)||(11637857-11637955)
chr6 (116-146)||(8482016-8482046)
chr6 (27-95)||(7301683-7301750)
chr6 (116-144)||(10073656-10073684)
chr6 (116-144)||(10902470-10902498)
[»] chr4 (10 HSPs)
chr4 (168-294)||(11197080-11197205)
chr4 (239-336)||(34946248-34946345)
chr4 (245-315)||(10396346-10396416)
chr4 (207-294)||(47680804-47680891)
chr4 (250-336)||(2917277-2917363)
chr4 (197-294)||(12718008-12718104)
chr4 (190-280)||(11307480-11307570)
chr4 (116-144)||(34946151-34946179)
chr4 (118-146)||(50002518-50002546)
chr4 (118-146)||(55933160-55933188)
[»] chr8 (7 HSPs)
chr8 (190-278)||(3671046-3671133)
chr8 (207-290)||(5981626-5981708)
chr8 (116-146)||(30359699-30359729)
chr8 (116-145)||(33113406-33113435)
chr8 (116-145)||(40579308-40579337)
chr8 (118-146)||(147912-147940)
chr8 (118-146)||(45122095-45122123)
[»] chr3 (9 HSPs)
chr3 (239-315)||(16143362-16143438)
chr3 (251-294)||(16869693-16869736)
chr3 (27-113)||(53595952-53596037)
chr3 (27-113)||(53596267-53596352)
chr3 (249-294)||(40196000-40196045)
chr3 (30-63)||(43978999-43979032)
chr3 (118-146)||(12114600-12114628)
chr3 (27-55)||(48127953-48127981)
chr3 (118-146)||(54017854-54017882)
[»] chr2 (7 HSPs)
chr2 (245-319)||(11727800-11727874)
chr2 (117-294)||(35414321-35414497)
chr2 (116-147)||(3672791-3672822)
chr2 (240-294)||(44981941-44981996)
chr2 (204-294)||(40053342-40053431)
chr2 (116-145)||(15511534-15511563)
chr2 (116-145)||(37106014-37106043)
[»] chr5 (4 HSPs)
chr5 (249-311)||(41341389-41341451)
chr5 (116-145)||(9498693-9498722)
chr5 (116-145)||(41632872-41632901)
chr5 (250-294)||(14168868-14168912)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 47159436 - 47159126
Alignment:
Q  18 atattagtagttggaaatcaaatgtgagtgattatgtcctacatcggttaaaaattaagaaaaatgttggatatataagaaagtagatccataaactcga 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||||||   | |||  |||||||||||||||||||||||| ||||||||||    
T  47159436 atattagtggttggaaatcaaatgtgagtgattatgtcctacatcagttaaaaatggtggaaac-gttggatatataagaaagtagatctataaactcga 47159338  T
Q  118 ttttgggtaagagtgtggtgtctctcttaacaaatcatagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcagag 217  Q
    |||||||||||||||||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47159337 ttttgggtaagagtgtggtgtctctcttaacagatcctaaacatttagctcattgccgctcacaacgattctcagacttcccaacaaattggtatcagag 47159238  T
Q  218 tcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaatta 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47159237 tcctggttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattgttggaaatta 47159138  T
Q  318 agcgtaactgat 329  Q
    | ||||| ||||    
T  47159137 atcgtaagtgat 47159126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 34666166 - 34666002
Alignment:
Q  118 ttttgggtaagagtgtggtgtct--ctcttaacaaatcatagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcag 215  Q
    |||||||||| ||||||||||||  ||||||||   || | |||||||| | ||||||| |||||| |  |||| ||||| ||||||||| |||||||||    
T  34666166 ttttgggtaaaagtgtggtgtctttctcttaacgggtcttggacgtttactccattgcccctcacagcacttctgagactccccaacaaactggtatcag 34666067  T
Q  216 agtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtg 280  Q
    ||||||| ||||||||| || |   ||| ||| |||||||||||||||||||  |||||||||||    
T  34666066 agtcctggttaggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtg 34666002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 31973611 - 31973493
Alignment:
Q  197 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaa 296  Q
    |||||||||||||||||| || | || ||||||||||||   ||||| ||| |||||||||||||||||||  |||||||||||  |||||||||||| |    
T  31973611 cccaacaaattggtatcaaagccttggttaggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttga 31973512  T
Q  297 aaggaagattattggaaat 315  Q
      || ||||| ||||||||    
T  31973511 gggggagattgttggaaat 31973493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 43834387 - 43834474
Alignment:
Q  207 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    ||||||||||  |||| |||||| ||||| | ||| |  ||||||||||||||||||||||  |||||||||||  ||| ||||||||    
T  43834387 tggtatcagaaccctggttaggcccgatgggggagcggaagtgggatcctagtgtggatcaggctagtgatgtgagtgactcacactt 43834474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 4753203 - 4753119
Alignment:
Q  193 acttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatg 278  Q
    |||||||||||| | |||||||| |||||| ||||||||  || ||||  | ||||||||||||||| |||||||| ||| |||||    
T  4753203 acttcccaacaact-ggtatcagggtcctgattaggctcagtgggagatcgggagtgggatcctagtatggatcatgctaatgatg 4753119  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 44043840 - 44043811
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  44043840 gattttgggtaagagtgtggtgtctctctt 44043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 14318959 - 14318987
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  14318959 ttttgggtaagagtgtggtgtctctctta 14318987  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 32594782 - 32594754
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  32594782 ttttgggtaagagtgtggtgtctctctta 32594754  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 21416423 - 21416320
Alignment:
Q  190 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtca 289  Q
    |||||| ||||||||||||||||||||| |||  ||||||| | || | ||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  21416423 cagactccccaacaaattggtatcagag-cctagttaggcttgctgggggagtgggagcgggatcctagtgtggatcatcctagtgatgtgggtgagtca 21416325  T
Q  290 cactt 294  Q
    |||||    
T  21416324 cactt 21416320  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 23569029 - 23568903
Alignment:
Q  155 tagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttaggctc-gatgagagagtgtgagtgggat 253  Q
    ||||||||||| |||||||||||  ||| | | | |||||| ||||||||| |||||||| || |||| |||||||  | || | ||||| |||  ||||    
T  23569029 tagacgtttagctcattgccgctaccaatgctccccagactccccaacaaactggtatcatag-cctggttaggctttgctgggggagtgggagcaggat 23568931  T
Q  254 cctagtgtggatcatcctagtgatgtgg 281  Q
    ||||||||||||||||||||||||||||    
T  23568930 cctagtgtggatcatcctagtgatgtgg 23568903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 27597859 - 27597964
Alignment:
Q  190 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtggg--atcctagtgtggatcatcctagtgatgtggatgagt 287  Q
    |||||| ||||| ||| ||||||||||| |||| ||||||| | || | ||||| ||| |||  | |||||||||||||||||||||||||||| |||||    
T  27597859 cagactccccaataaactggtatcagag-cctgattaggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagt 27597957  T
Q  288 cacactt 294  Q
    |||||||    
T  27597958 cacactt 27597964  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 27938752 - 27938824
Alignment:
Q  27 gttggaaatcaaatgtgagtgattatgtcctacatcggttaaaaattaagaaaaatgttggatatataagaaag 100  Q
    ||||||||| || ||||||||||||||||| ||||||| | |||||| ||  ||  ||||||||||||||||||    
T  27938752 gttggaaataaagtgtgagtgattatgtccgacatcggctgaaaattgag-gaatcgttggatatataagaaag 27938824  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 45433331 - 45433360
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  45433331 gattttgggtaagagtgtggtgtctctctt 45433360  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 7301576 - 7301482
Alignment:
Q  197 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcaca 291  Q
    ||||||||| | ||||||||| | || |||||||||||| | ||||| ||| ||||||||| |||||||||  |||||||||||| |||||||||    
T  7301576 cccaacaaactagtatcagagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcaca 7301482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 337
Target Start/End: Complemental strand, 11637955 - 11637857
Alignment:
Q  239 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgatgatgtcca 337  Q
    ||||| ||||||||||||  |||||||||| ||||| |||||| |||||||||||| |  |||||||| ||| |||| ||| || | |||| |||||||    
T  11637955 gagtgagagtgggatccttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtgataatgtcca 11637857  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 8482016 - 8482046
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||||    
T  8482016 gattttgggtaagagtgtggtgtctctctta 8482046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 7301750 - 7301683
Alignment:
Q  27 gttggaaatcaaatgtgagtgattatgtcctacatcggttaaaaattaagaaaaatgttggatatataa 95  Q
    |||||||||||| ||||||| ||||||||| ||||||  |||||||  || |||||||| |||||||||    
T  7301750 gttggaaatcaagtgtgagtaattatgtcccacatcgactaaaaatggag-aaaatgttagatatataa 7301683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 10073684 - 10073656
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctct 144  Q
    |||||||||||||||||||||||||||||    
T  10073684 gattttgggtaagagtgtggtgtctctct 10073656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 10902498 - 10902470
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctct 144  Q
    |||||||||||||||||||||||||||||    
T  10902498 gattttgggtaagagtgtggtgtctctct 10902470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 11197080 - 11197205
Alignment:
Q  168 cattgccgctcacaacgattctcagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatca 267  Q
    |||||||||||  |||| | | |||||| || |||||| ||||||||||| |||  ||||||| | || | ||||| ||| |||||||| ||||||||||    
T  11197080 cattgccgctccaaacgctccccagactcccaaacaaactggtatcagag-cctagttaggcttgctgggggagtgggagcgggatcctggtgtggatca 11197178  T
Q  268 tcctagtgatgtggatgagtcacactt 294  Q
    |||||||||||||| ||||| ||||||    
T  11197179 tcctagtgatgtgggtgagtaacactt 11197205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 34946345 - 34946248
Alignment:
Q  239 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgatgatgtcc 336  Q
    ||||| || ||||||| |||| ||||||||||||||||||||| |||||||||||| | ||| ||||| |||||||| ||| || | |||| ||||||    
T  34946345 gagtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtgagtgataatgtcc 34946248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 10396346 - 10396416
Alignment:
Q  245 gagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaat 315  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||| |  || ||||| ||||||||    
T  10396346 gagtgggatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttggaaat 10396416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 47680804 - 47680891
Alignment:
Q  207 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    ||||||||||| |||| ||||||||  || | ||| | |||||||||||||||| ||||||  |||||||||||| ||| ||||||||    
T  47680804 tggtatcagagccctggttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacactt 47680891  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 2917363 - 2917277
Alignment:
Q  250 ggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaagcgtaactgatgatgtcc 336  Q
    |||||| ||||||||| | ||||||||||||| |||||||||||| |  |||||||| |||||||| || ||| | |||| ||||||    
T  2917363 ggatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtgataatgtcc 2917277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 12718104 - 12718008
Alignment:
Q  197 cccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    ||||| |||||||||| |||| |||  ||||||| | || | ||||| |||  |||||||||| ||||||||||||||||||||| | ||||||||||    
T  12718104 cccaataaattggtattagag-cctagttaggcttgctgggggagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacactt 12718008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 11307570 - 11307480
Alignment:
Q  190 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtg 280  Q
    |||||| ||||||||| |||||||| ||  ||| ||||||| |||| | | | | ||||||| |||||||||||||||  |||||||||||    
T  11307570 cagactccccaacaaactggtatcatagctctggttaggcttgatgggggtgcgggagtgggttcctagtgtggatcaggctagtgatgtg 11307480  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 34946179 - 34946151
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctct 144  Q
    |||||||||||||||||||||||||||||    
T  34946179 gattttgggtaagagtgtggtgtctctct 34946151  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 50002518 - 50002546
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  50002518 ttttgggtaagagtgtggtgtctctctta 50002546  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 55933188 - 55933160
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  55933188 ttttgggtaagagtgtggtgtctctctta 55933160  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 3671133 - 3671046
Alignment:
Q  190 cagacttcccaacaaattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatg 278  Q
    |||||| ||||||||||||||||||||||| ||  |||||| | || | ||||| ||| |||||||||||||||||| |||||||||||    
T  3671133 cagactccccaacaaattggtatcagagtc-tggctaggcttgctgggggagtgggagcgggatcctagtgtggatcgtcctagtgatg 3671046  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 5981708 - 5981626
Alignment:
Q  207 tggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcac 290  Q
    ||||||||||  |||| ||||||||| || | ||||| ||| |||||||||||||||||||  |||||||||||| ||| ||||    
T  5981708 tggtatcagaaccctggttaggctcggtggg-gagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcac 5981626  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 30359699 - 30359729
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||||    
T  30359699 gattttgggtaagagtgtggtgtctctctta 30359729  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 33113435 - 33113406
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  33113435 gattttgggtaagagtgtggtgtctctctt 33113406  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 40579337 - 40579308
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  40579337 gattttgggtaagagtgtggtgtctctctt 40579308  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Original strand, 147912 - 147940
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  147912 ttttgggtaagagtgtggtgtctctctta 147940  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 45122123 - 45122095
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  45122123 ttttgggtaagagtgtggtgtctctctta 45122095  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 16143362 - 16143438
Alignment:
Q  239 gagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaat 315  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||| |  || ||||| ||||||||    
T  16143362 gagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggagattgttggaaat 16143438  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 16869736 - 16869693
Alignment:
Q  251 gatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||    
T  16869736 gatcctagtgtggatcatgctagtgatgtgggtgattcacactt 16869693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 53595952 - 53596037
Alignment:
Q  27 gttggaaatcaaatgtgagtgattatgtcctacatcggttaaaaattaagaaaaatgttggatatataagaaagtagatccataaac 113  Q
    |||||||||||| || |||||||||||||| |||| |  || ||||  || |||||||||||||||||||| || ||| ||||||||    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagag-aaaatgttggatatataagagaggagacccataaac 53596037  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 53596267 - 53596352
Alignment:
Q  27 gttggaaatcaaatgtgagtgattatgtcctacatcggttaaaaattaagaaaaatgttggatatataagaaagtagatccataaac 113  Q
    |||||||||||| || |||||||||||||| |||| |  || ||||  || |||||||||||||||||||| || ||| ||||||||    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagag-aaaatgttggatatataagagaggagacccataaac 53596352  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 40196045 - 40196000
Alignment:
Q  249 gggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    |||||||||||||||||||  |||||||||||| ||| ||||||||    
T  40196045 gggatcctagtgtggatcaggctagtgatgtgggtgactcacactt 40196000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 43979032 - 43978999
Alignment:
Q  30 ggaaatcaaatgtgagtgattatgtcctacatcg 63  Q
    ||||||||||||||||||||||||||| ||||||    
T  43979032 ggaaatcaaatgtgagtgattatgtcccacatcg 43978999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 12114628 - 12114600
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  12114628 ttttgggtaagagtgtggtgtctctctta 12114600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 48127981 - 48127953
Alignment:
Q  27 gttggaaatcaaatgtgagtgattatgtc 55  Q
    |||||||||||||||||||||||||||||    
T  48127981 gttggaaatcaaatgtgagtgattatgtc 48127953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 54017882 - 54017854
Alignment:
Q  118 ttttgggtaagagtgtggtgtctctctta 146  Q
    |||||||||||||||||||||||||||||    
T  54017882 ttttgggtaagagtgtggtgtctctctta 54017854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 11727874 - 11727800
Alignment:
Q  245 gagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattggaaattaag 319  Q
    |||||||||||||||||||||||  |||||||||||| ||| |||||||  | ||| ||||||||| ||||||||    
T  11727874 gagtgggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattgaaaattaag 11727800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 35414497 - 35414321
Alignment:
Q  117 attttgggtaagagtgtggtgtctctcttaacaaatcatagacgtttagttcattgccgctcacaacgattctcagacttcccaacaaattggtatcaga 216  Q
    ||||||| ||| | |||||||||||||||||    || ||||| ||||| ||||||| |||   | || | | |||||| ||||| || |||||||||||    
T  35414497 attttggataaaactgtggtgtctctcttaatgggtcctagacatttagctcattgctgcttcaagcgttccccagactccccaataatttggtatcaga 35414398  T
Q  217 gtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    ||| |||| ||||| | | || ||||||||  |||||||||||||||| | || ||||| | ||||||||||||||||    
T  35414397 gtcttgtt-aggcttgctaagggagtgtgaacgggatcctagtgtggaccgtcttagtggtttggatgagtcacactt 35414321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 3672791 - 3672822
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctcttaa 147  Q
    ||||||||||||||||||||||||||||||||    
T  3672791 gattttgggtaagagtgtggtgtctctcttaa 3672822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 44981996 - 44981941
Alignment:
Q  240 agtgtgagtgggatcctagtgtggatc-atcctagtgatgtggatgagtcacactt 294  Q
    ||||||||||||||||||||||||||| |  |||||||||||| ||| ||||||||    
T  44981996 agtgtgagtgggatcctagtgtggatcaaggctagtgatgtgggtgactcacactt 44981941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 40053342 - 40053431
Alignment:
Q  204 aattggtatcagagtcctgtttaggctcgatgagagagtgtgagtgggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    |||||||||||||| |||  |||||||||||| | ||| |  |||||||||||||  |||||||  |||||||||||| ||| ||||||||    
T  40053342 aattggtatcagagccctcattaggctcgatggg-gagcggaagtgggatcctagcctggatcaggctagtgatgtgggtgactcacactt 40053431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 15511563 - 15511534
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  15511563 gattttgggtaagagtgtggtgtctctctt 15511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 37106014 - 37106043
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  37106014 gattttgggtaagagtgtggtgtctctctt 37106043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 41341389 - 41341451
Alignment:
Q  249 gggatcctagtgtggatcatcctagtgatgtggatgagtcacacttaaaaggaagattattgg 311  Q
    |||||||||||||||||||  |||||||||||| ||| |||||||| |  || ||||||||||    
T  41341389 gggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgg 41341451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 9498722 - 9498693
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  9498722 gattttgggtaagagtgtggtgtctctctt 9498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 41632872 - 41632901
Alignment:
Q  116 gattttgggtaagagtgtggtgtctctctt 145  Q
    ||||||||||||||||||||||||||||||    
T  41632872 gattttgggtaagagtgtggtgtctctctt 41632901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 14168868 - 14168912
Alignment:
Q  250 ggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 294  Q
    |||| |||||||||||||| |||||||||||||||| ||| ||||    
T  14168868 ggattctagtgtggatcatgctagtgatgtggatgattcatactt 14168912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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